Miyakogusa Predicted Gene

Lj6g3v1742800.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1742800.1 Non Chatacterized Hit- tr|F6I2A9|F6I2A9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,65.08,0.00000000000001,SUBFAMILY NOT NAMED,NULL; STRESS ASSOCIATED
ENDOPLASMIC RETICULUM PROTEIN (SERP1/RAMP4),Endoplasmic ,CUFF.59852.1
         (192 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW598654 homologue to UniRef100_A7QP46 Cluster: Chromos...    58   2e-08
gnl|LJGI|BW597928 similar to UniRef100_A7QP46 Cluster: Chromosom...    58   2e-08
gnl|LJGI|TC71125 homologue to UniRef100_A7QP46 Cluster: Chromoso...    58   2e-08

>gnl|LJGI|BW598654 homologue to UniRef100_A7QP46 Cluster: Chromosome chr1
           scaffold_136, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_136, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (66%)
          Length = 476

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 115 ttctttgtctttgttgttcttggatcatctctgtttcagat 155
           |||||||||||||||||  ||||||||||||| ||||||||
Sbjct: 285 ttctttgtctttgttgtcattggatcatctctctttcagat 325


>gnl|LJGI|BW597928 similar to UniRef100_A7QP46 Cluster: Chromosome chr1 scaffold_136,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_136, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (66%)
          Length = 341

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 115 ttctttgtctttgttgttcttggatcatctctgtttcagat 155
           |||||||||||||||||  ||||||||||||| ||||||||
Sbjct: 145 ttctttgtctttgttgtcattggatcatctctctttcagat 185


>gnl|LJGI|TC71125 homologue to UniRef100_A7QP46 Cluster: Chromosome chr1
           scaffold_136, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_136, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (66%)
          Length = 583

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 115 ttctttgtctttgttgttcttggatcatctctgtttcagat 155
           |||||||||||||||||  ||||||||||||| ||||||||
Sbjct: 351 ttctttgtctttgttgtcattggatcatctctctttcagat 391