Miyakogusa Predicted Gene
- Lj6g3v1722650.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1722650.1 Non Chatacterized Hit- tr|K4BKL5|K4BKL5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,25.24,2e-18,Small MutS-related domain,Smr protein/MutS2
C-terminal; PPR_2,Pentatricopeptide repeat;
PPR,Pentatri,NODE_42601_length_2165_cov_10.750577.path2.1
(1702 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64139 weakly similar to UniRef100_Q9FSB5 Cluster: RSP... 686 0.0
gnl|LJGI|FS349373 similar to UniRef100_Q9LF83 Cluster: 67kD chlo... 615 e-175
gnl|LJGI|FS317486 weakly similar to UniRef100_A7R299 Cluster: Ch... 92 1e-17
>gnl|LJGI|TC64139 weakly similar to UniRef100_Q9FSB5 Cluster: RSP67.2; n=1; Raphanus
sativus|Rep: RSP67.2 - Raphanus sativus (Radish),
partial (13%)
Length = 720
Score = 686 bits (346), Expect = 0.0
Identities = 346/346 (100%)
Strand = Plus / Plus
Query: 1 atggagaattctgaaaccgcacccgttgttctacgttacttgcgggacaagattaaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atggagaattctgaaaccgcacccgttgttctacgttacttgcgggacaagattaaaccc 434
Query: 61 accagaggcaaagagttggttctttacaatgtggccatgaaggttttcaagaagtgtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 accagaggcaaagagttggttctttacaatgtggccatgaaggttttcaagaagtgtaag 494
Query: 121 gattttgaaggtgcggagaagctgtttgatgaaatgcttcagagaaagttgaagccggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gattttgaaggtgcggagaagctgtttgatgaaatgcttcagagaaagttgaagccggat 554
Query: 181 aacgttactttcgcgactatgattaactgtgctaggttgtgttctatgtctgacagggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aacgttactttcgcgactatgattaactgtgctaggttgtgttctatgtctgacagggct 614
Query: 241 gtggagtggtttgagaagatgccgggtttcgggtgtgagccggatgctgtcacgtgtgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtggagtggtttgagaagatgccgggtttcgggtgtgagccggatgctgtcacgtgtgcg 674
Query: 301 accgtgatatttgcttatgcgcgtgttgagaatgttgatatggctg 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 accgtgatatttgcttatgcgcgtgttgagaatgttgatatggctg 720
>gnl|LJGI|FS349373 similar to UniRef100_Q9LF83 Cluster: 67kD chloroplastic RNA-binding
protein, P67; n=1; Arabidopsis thaliana|Rep: 67kD
chloroplastic RNA-binding protein, P67 - Arabidopsis
thaliana (Mouse-ear cress), partial (11%)
Length = 468
Score = 615 bits (310), Expect = e-175
Identities = 319/322 (99%)
Strand = Plus / Minus
Query: 1381 gttggagctgctatgactgcgttacatgtttggataaacgacttgtgtaaggctttggaa 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gttggagctgctatgactgcgttacatgtttggataaacgacttgtgtaaggctttggaa 409
Query: 1441 tcaggggaggagcttccatcactaggaattaatactgggattggaaaataccagttttca 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcaggggaggagcttccatcactaggaattaatactgggattggaaaataccagttttca 349
Query: 1501 gacaaaggcttggctagtgtatttgaatcgcatttgaagaaactcaaagctccattccat 1560
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gacaaaggcttgggtagtgtatttgaatcgcatttgaagaaactcaaagctccattccat 289
Query: 1561 gaggctccagataagcctggctggttttttatatcaaagaaagcagccaaatcatggctg 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaggctccagataagcctggctggttttttatatcaaagaaagcagccaaatcatggctg 229
Query: 1621 aagtctaggggttcagccaaatcaattgctgctctggactctctggttttaggtgttcca 1680
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 228 aagtttaggggttcagccaaatcaattgctgctctggactctttggttttaggtgttcca 169
Query: 1681 acaatggcccttccctattgat 1702
||||||||||||||||||||||
Sbjct: 168 acaatggcccttccctattgat 147
>gnl|LJGI|FS317486 weakly similar to UniRef100_A7R299 Cluster: Chromosome undetermined
scaffold_410, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_410,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (35%)
Length = 766
Score = 91.7 bits (46), Expect = 1e-17
Identities = 145/178 (81%)
Strand = Plus / Plus
Query: 305 tgatatttgcttatgcgcgtgttgagaatgttgatatggctgagcgcctttatgatcgtg 364
|||||| || ||||||||| ||| ||||| ||||||||| | |||| |||||||| |
Sbjct: 239 tgatatatgtttatgcgcggattggtaatgtcgatatggctttgagcctgtatgatcgcg 298
Query: 365 cgaagacggagaattggaggcttgacacggtgacgttctcagcattgattaagatgtatg 424
||||||||||||| ||| | |||| |||||| ||||||| || ||||||||||||||||
Sbjct: 299 cgaagacggagaagtggcgtgttgatacggtggcgttctcggcgttgattaagatgtatg 358
Query: 425 gcatgttggaagactacgatcaatgcttaaatgtttacgatgatatgaaggttcttgg 482
| |||| || | | || ||| ||||||| ||||||| ||| ||||||||||||||
Sbjct: 359 ggatgtcgggaaattatgatgcgtgcttaagtgtttacagtgacatgaaggttcttgg 416