Miyakogusa Predicted Gene
- Lj6g3v1707190.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1707190.1 Non Chatacterized Hit- tr|Q84JP3|Q84JP3_ARATH
Putative uncharacterized protein (Fragment)
OS=Arabido,45,3e-19,HRDC-like,HRDC-like; DNA-DIRECTED RNA POLYMERASE
II,NULL; RNA_pol_Rpb4,RNA polymerase II, Rpb4; DNA-,CUFF.59813.1
(603 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57724 similar to UniRef100_A2Q5H4 Cluster: RNA polyme... 1172 0.0
gnl|LJGI|BW598748 similar to UniRef100_A2Q5H4 Cluster: RNA polym... 773 0.0
>gnl|LJGI|TC57724 similar to UniRef100_A2Q5H4 Cluster: RNA polymerase Rpb4; n=1;
Medicago truncatula|Rep: RNA polymerase Rpb4 - Medicago
truncatula (Barrel medic), partial (48%)
Length = 879
Score = 1172 bits (591), Expect = 0.0
Identities = 600/603 (99%)
Strand = Plus / Plus
Query: 1 atgtcggacaaaactggaaagggctttacgccgtttggcaaagcaggatccctgaaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 atgtcggacaaaactggaaagggctttacgccgtttggcaaagcaggatccctgaaaggg 90
Query: 61 aaagatgacagtacaccaaaatcagcacagggaaggaaggctcagttttccaaagaaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 aaagatgacagtacaccaaaatcagcacagggaaggaaggctcagttttccaaagaaggt 150
Query: 121 ccatttcaatccagaatgaatggttcaccgacacctggtggaaaaggtgaaaaggaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ccatttcaatccagaatgaatggttcaccgacacctggtggaaaaggtgaaaaggaggac 210
Query: 181 aaggctgcaaatggtggaaagacttcagggtcacaagaccttaaaattgatcgagaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aaggctgcaaatggtggaaagacttcagggtcacaagaccttaaaattgatcgagaactt 270
Query: 241 ccagcaaatgtcaaatgcttgatggattgtgaggctgcagatattttacagggaattcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccagcaaatgtcaaatgcttgatggattgtgaggctgcagatattttacagggaattcaa 330
Query: 301 gagcagatggtcacgctatctagagatccaactatcaaactcccaggaccatttgacaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gagcagatggtcacgctatctagagatccaactatcaaactcccaggaccatttgacaag 390
Query: 361 gggctgcagtatgccaaaagcagtagcaagtatacaaatgccaagtccattagacgcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gggctgcagtatgccaaaagcagtagcaagtatacaaatgccaagtccattagacgcatt 450
Query: 421 gttgagcctcttgcaaataatggtctcactgattgtgaggtatgtgtgattgctaatgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gttgagcctcttgcaaataatggtctcactgattgtgaggtatgtgtgattgctaatgtg 510
Query: 481 tgcccagaaactgttgatgaaatttatgctctcctcccatcattgaagggtaaaataaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 511 tgcccagaaactgttgatgaaatttatgctctcctcccatcattgaagggtaagataaac 570
Query: 541 cttaacagacaacttcttgaagattcagtgaatgagcttgcaaagcttagacgaccagtc 600
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 571 cttaacagacaacttcttgaagattcagtgagtgagcttgctaagcttagacgaccagtc 630
Query: 601 taa 603
|||
Sbjct: 631 taa 633
>gnl|LJGI|BW598748 similar to UniRef100_A2Q5H4 Cluster: RNA polymerase Rpb4; n=1;
Medicago truncatula|Rep: RNA polymerase Rpb4 - Medicago
truncatula (Barrel medic), partial (41%)
Length = 469
Score = 773 bits (390), Expect = 0.0
Identities = 390/390 (100%)
Strand = Plus / Plus
Query: 39 caaagcaggatccctgaaagggaaagatgacagtacaccaaaatcagcacagggaaggaa 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 caaagcaggatccctgaaagggaaagatgacagtacaccaaaatcagcacagggaaggaa 139
Query: 99 ggctcagttttccaaagaaggtccatttcaatccagaatgaatggttcaccgacacctgg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ggctcagttttccaaagaaggtccatttcaatccagaatgaatggttcaccgacacctgg 199
Query: 159 tggaaaaggtgaaaaggaggacaaggctgcaaatggtggaaagacttcagggtcacaaga 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tggaaaaggtgaaaaggaggacaaggctgcaaatggtggaaagacttcagggtcacaaga 259
Query: 219 ccttaaaattgatcgagaacttccagcaaatgtcaaatgcttgatggattgtgaggctgc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccttaaaattgatcgagaacttccagcaaatgtcaaatgcttgatggattgtgaggctgc 319
Query: 279 agatattttacagggaattcaagagcagatggtcacgctatctagagatccaactatcaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agatattttacagggaattcaagagcagatggtcacgctatctagagatccaactatcaa 379
Query: 339 actcccaggaccatttgacaaggggctgcagtatgccaaaagcagtagcaagtatacaaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actcccaggaccatttgacaaggggctgcagtatgccaaaagcagtagcaagtatacaaa 439
Query: 399 tgccaagtccattagacgcattgttgagcc 428
||||||||||||||||||||||||||||||
Sbjct: 440 tgccaagtccattagacgcattgttgagcc 469