Miyakogusa Predicted Gene
- Lj6g3v1690540.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1690540.2 tr|E5GCA9|E5GCA9_CUCME Protein SEY1 OS=Cucumis
melo subsp. melo PE=4 SV=1,58.23,9e-16,RHD3,Root hair defective 3
GTP-binding; no description,NULL; P-loop containing nucleoside
triphospha,CUFF.59765.2
(1026 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60905 similar to UniRef100_Q6Q625 Cluster: Root hair ... 1336 0.0
gnl|LJGI|FS331262 similar to UniRef100_A7QCR6 Cluster: Chromosom... 950 0.0
gnl|LJGI|TC61691 homologue to UniRef100_Q0JLS6 Cluster: Os01g057... 161 1e-38
>gnl|LJGI|TC60905 similar to UniRef100_Q6Q625 Cluster: Root hair defective 3
GTP-binding protein; n=1; Triticum aestivum|Rep: Root
hair defective 3 GTP-binding protein - Triticum aestivum
(Wheat), partial (27%)
Length = 839
Score = 1336 bits (674), Expect = 0.0
Identities = 683/686 (99%)
Strand = Plus / Plus
Query: 1 atggcgagaatcgacgacgattgccacgccacgcagctcatcgacggcgacggcaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atggcgagaatcgacgacgattgccacgccacgcagctcatcgacggcgacggcaccttc 213
Query: 61 aacgtcgccggcctcgacactttcatcaaaacctctagcctcgctgcttgcggcctctcc 120
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 214 aacgtcgccggcctcgacactttcatcaaaacctccagcctcgccgcttgtggcctctcc 273
Query: 121 tacgccgtcgtcgccatcatgggtcctcaaagcagcgggaagagtacattgatgaatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tacgccgtcgtcgccatcatgggtcctcaaagcagcgggaagagtacattgatgaatcat 333
Query: 181 cttttccacacaagtttcagggagatggatgctttcaggggaagatcgcaaacgactaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cttttccacacaagtttcagggagatggatgctttcaggggaagatcgcaaacgactaag 393
Query: 241 ggcatttggatagccaagtgtgttggaattgagccttgcactgttgctatggatttagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggcatttggatagccaagtgtgttggaattgagccttgcactgttgctatggatttagag 453
Query: 301 ggcactgatggaagggagaggggtgaggatgataccgcttttgagaaacagagcgctctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggcactgatggaagggagaggggtgaggatgataccgcttttgagaaacagagcgctctt 513
Query: 361 tttgctttagcagtatcagatattgttctgataaacatgtggtgtcatgatattggtcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tttgctttagcagtatcagatattgttctgataaacatgtggtgtcatgatattggtcga 573
Query: 421 gaacaagcagccaataagcctcttttaaaaacagtttttcaggtgatgatgcgtttattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaacaagcagccaataagcctcttttaaaaacagtttttcaggtgatgatgcgtttattc 633
Query: 481 agtccccgcaagacaacattgctttttgttattcgtgataaatcaaagacaccgatggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agtccccgcaagacaacattgctttttgttattcgtgataaatcaaagacaccgatggaa 693
Query: 541 aatttggagcctattctgagagaagatattcaaaagatttgggatgcagtttcaaaaccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aatttggagcctattctgagagaagatattcaaaagatttgggatgcagtttcaaaaccc 753
Query: 601 caagctcacaaaaatactcctctcagtgaattttttaatgtggaggttactggattgtca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 caagctcacaaaaatactcctctcagtgaattttttaatgtggaggttactggattgtca 813
Query: 661 agctatgaggacaaggaggataagtt 686
||||||||||||||||||||||||||
Sbjct: 814 agctatgaggacaaggaggataagtt 839
>gnl|LJGI|FS331262 similar to UniRef100_A7QCR6 Cluster: Chromosome undetermined
scaffold_79, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_79, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (25%)
Length = 732
Score = 950 bits (479), Expect = 0.0
Identities = 497/503 (98%), Gaps = 5/503 (0%)
Strand = Plus / Plus
Query: 139 atgggtcctcaaagcagcgggaagagtacattgatgaatcatcttttccacacaagtttc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgggtcctcaaagcagcgggaagagtacattgatgaatcatcttttccacacaagtttc 60
Query: 199 agggagatggatgctttcaggggaagatcgcaaacgactaagggcatttggatagccaag 258
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 agggagatggatgctttcaggggaggatcgcaaacgactaagggcatttggatagccaag 120
Query: 259 tgtgttggaattgagccttgcactgttgctatggatttagagggcactgatggaagggag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtgttggaattgagccttgcactgttgctatggatttagagggcactgatggaagggag 180
Query: 319 aggggtgaggatgataccgcttttgagaaacagagcgctctttttgctttagcagtatca 378
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agggg-----atgataccgcttttgagaaacagagcgctctttttgctttagcagtatca 235
Query: 379 gatattgttctgataaacatgtggtgtcatgatattggtcgagaacaagcagccaataag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gatattgttctgataaacatgtggtgtcatgatattggtcgagaacaagcagccaataag 295
Query: 439 cctcttttaaaaacagtttttcaggtgatgatgcgtttattcagtccccgcaagacaaca 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cctcttttaaaaacagtttttcaggtgatgatgcgtttattcagtccccgcaagacaaca 355
Query: 499 ttgctttttgttattcgtgataaatcaaagacaccgatggaaaatttggagcctattctg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgctttttgttattcgtgataaatcaaagacaccgatggaaaatttggagcctattctg 415
Query: 559 agagaagatattcaaaagatttgggatgcagtttcaaaaccccaagctcacaaaaatact 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agagaagatattcaaaagatttgggatgcagtttcaaaaccccaagctcacaaaaatact 475
Query: 619 cctctcagtgaattttttaatgt 641
|||||||||||||||||||||||
Sbjct: 476 cctctcagtgaattttttaatgt 498
Score = 264 bits (133), Expect = 1e-69
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 640 gtggaggttactggattgtcaagctatgaggacaaggaggataagtttaaggaggaggtt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtggaggttactggattgtcaagctatgaggacaaggaggataagtttaaggaggaggtt 659
Query: 700 gctcaattaaggcagcgtttcttccattctgtagcgcctggaggccttgccggtgatcgg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gctcaattaaggcagcgtttcttccattctgtagcgcctggaggccttgccggtgatcgg 719
Query: 760 cgtggtgttgtgc 772
|||||||||||||
Sbjct: 720 cgtggtgttgtgc 732
>gnl|LJGI|TC61691 homologue to UniRef100_Q0JLS6 Cluster: Os01g0575000 protein; n=2;
Oryza sativa Japonica Group|Rep: Os01g0575000 protein -
Oryza sativa subsp. japonica (Rice), partial (34%)
Length = 947
Score = 161 bits (81), Expect = 1e-38
Identities = 285/353 (80%)
Strand = Plus / Plus
Query: 289 atggatttagagggcactgatggaagggagaggggtgaggatgataccgcttttgagaaa 348
|||||||| ||||| || |||||||| || | || ||||||||||| || ||||| ||
Sbjct: 386 atggatttggagggtacagatggaagagaacgtggagaggatgatactgcatttgaaaag 445
Query: 349 cagagcgctctttttgctttagcagtatcagatattgttctgataaacatgtggtgtcat 408
||||| ||||| |||||| | || || |||||||| || || |||||||||||||| |||
Sbjct: 446 cagagtgctctgtttgctcttgctgtctcagatatagtgctaataaacatgtggtgccat 505
Query: 409 gatattggtcgagaacaagcagccaataagcctcttttaaaaacagtttttcaggtgatg 468
|| ||||| || || ||||| || |||||||| ||||| ||||| || |||||||| |||
Sbjct: 506 gacattggccgtgagcaagctgcaaataagccgcttttgaaaactgtctttcaggtcatg 565
Query: 469 atgcgtttattcagtccccgcaagacaacattgctttttgttattcgtgataaatcaaag 528
||| | || || ||||| ||||| ||||||||| | ||||| || ||||||||| ||| |
Sbjct: 566 atgagattgtttagtccgcgcaaaacaacattgttgtttgtcatacgtgataaaacaagg 625
Query: 529 acaccgatggaaaatttggagcctattctgagagaagatattcaaaagatttgggatgca 588
||||| | |||||||| || ||| || || ||||||||||||||||||| ||||| |
Sbjct: 626 acaccactcgaaaatttagaacctgttttgcgagaagatattcaaaagatctgggactct 685
Query: 589 gtttcaaaaccccaagctcacaaaaatactcctctcagtgaattttttaatgt 641
||| | ||||| || || ||||| | || ||||| ||||||||||| |||||
Sbjct: 686 gttcctaaaccacacgcccacaaggaaacccctctaagtgaatttttcaatgt 738