Miyakogusa Predicted Gene

Lj6g3v1629660.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1629660.1 tr|Q9LT74|Q9LT74_ARATH Similarity to late
embryogenesis abundant protein OS=Arabidopsis thaliana
GN=,52.86,0.000000001,Root_cap,Root cap; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; seg,NULL,CUFF.59710.1
         (1113 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV406674 weakly similar to UniRef100_Q9LT74 Cluster: Si...   446   e-124

>gnl|LJGI|AV406674 weakly similar to UniRef100_Q9LT74 Cluster: Similarity to late
           embryogenesis abundant protein; n=2; Arabidopsis
           thaliana|Rep: Similarity to late embryogenesis abundant
           protein - Arabidopsis thaliana (Mouse-ear cress),
           partial (6%)
          Length = 397

 Score =  446 bits (225), Expect = e-124
 Identities = 312/341 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaatgacaatccttcaagtgttgttgccaatccttctggcgatggtggcaggcata 60
           |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 57  atggcaatgacaattcttcaagttttgttgccaatcctgctggcgatggtggcaggcata 116

                                                                       
Query: 61  gcagctgctcctcctgctggagaaccctataattacaaatatgggtatgcaacctgcaac 120
           ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 117 gcagctgctcctcctactggagaagtctataattacaaatatgggtatgcaacctgcaac 176

                                                                       
Query: 121 ataaagaagtacaagtattgctataatttgccacaagagtgccctgcatcttgccctggt 180
           |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||   
Sbjct: 177 ataaagaagtacaagtattgttataattggcctcaagagtgccctgcatcttgccctaac 236

                                                                       
Query: 181 agatgtaaagtgaattgtgccacctgcaaacctgtttgtattccgaaagagaaagcaaaa 240
           | |||||||||| |||||||||||||||||||| | ||| |||||||||||||||| | |
Sbjct: 237 aaatgtaaagtggattgtgccacctgcaaacctatctgtgttccgaaagagaaagctaga 296

                                                                       
Query: 241 tgcaagaacaaaaaattcccaagatgttacaacacggaacatgtttgccctgctgcatgc 300
           ||||||||||| |||||| | || ||||||||||| |||||||||||||||||| | |||
Sbjct: 297 tgcaagaacaagaaattcactagctgttacaacacagaacatgtttgccctgcttcttgc 356

                                                    
Query: 301 cctggtccctgtgaggttgattgcaacacttgcaaaccagt 341
           |||||| | |||||||||||||||| |||||||||||||||
Sbjct: 357 cctggtgcatgtgaggttgattgcaccacttgcaaaccagt 397