Miyakogusa Predicted Gene
- Lj6g3v1586670.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1586670.1 tr|G7IKZ2|G7IKZ2_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_2g032630 PE,79.96,0,Domain with
2 conserved Trp (W) residues,WW/Rsp5/WWP; DEAD-like helicases
superfamily,Helicase, supe,CUFF.59637.1
(3276 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV407128 similar to UniRef100_Q0IR12 Cluster: Os11g0689... 444 e-123
gnl|LJGI|TC76545 homologue to UniRef100_A7NVW1 Cluster: Chromoso... 274 3e-72
gnl|LJGI|TC72320 similar to UniRef100_A4S964 Cluster: Cytosolic ... 274 3e-72
gnl|LJGI|TC63774 similar to UniRef100_Q9SP26 Cluster: P72 DEAD b... 82 3e-14
gnl|LJGI|TC68521 similar to UniRef100_A7P045 Cluster: Chromosome... 54 6e-06
>gnl|LJGI|AV407128 similar to UniRef100_Q0IR12 Cluster: Os11g0689400 protein; n=1; Oryza
sativa Japonica Group|Rep: Os11g0689400 protein - Oryza
sativa subsp. japonica (Rice), partial (3%)
Length = 224
Score = 444 bits (224), Expect = e-123
Identities = 224/224 (100%)
Strand = Plus / Plus
Query: 2115 ggttaacattggaagtgtggatgagcttgctgcaaataagtctattactcagtacgttga 2174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttaacattggaagtgtggatgagcttgctgcaaataagtctattactcagtacgttga 60
Query: 2175 agttgtcccccaaatggagaaacagaggcgtttggagcagatcctcagatcccaagagcg 2234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttgtcccccaaatggagaaacagaggcgtttggagcagatcctcagatcccaagagcg 120
Query: 2235 aggttctaaaatcataatattttgttccacaaagaggttatgtgatcagcttgcccgcac 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggttctaaaatcataatattttgttccacaaagaggttatgtgatcagcttgcccgcac 180
Query: 2295 tattggtcgcagttttggggctgctgcaatccatggagacaagt 2338
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattggtcgcagttttggggctgctgcaatccatggagacaagt 224
>gnl|LJGI|TC76545 homologue to UniRef100_A7NVW1 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (3%)
Length = 713
Score = 274 bits (138), Expect = 3e-72
Identities = 144/146 (98%)
Strand = Plus / Minus
Query: 2940 tgttggtcggggcaggggtgatcgtggtcccaatgatcggtacaacatggatgggcgtgg 2999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgttggtcggggcaggggtgatcgtggtcccaatgatcggtacaacatggatgggcgtgg 200
Query: 3000 acggggacgatttgacaataggagagatgttgcttacagaagtagaggcagaagtcgtag 3059
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 199 acggggacaatttgacaataggagagatgttgcttacagaagtagaggcagaaatcgtag 140
Query: 3060 ccctgaaagagttcgaacatgggact 3085
||||||||||||||||||||||||||
Sbjct: 139 ccctgaaagagttcgaacatgggact 114
>gnl|LJGI|TC72320 similar to UniRef100_A4S964 Cluster: Cytosolic 80S ribosomal protein
S2; Cytosolic 40S small ribosomal subunit protein S2;
n=1; Ostreococcus lucimarinus CCE9901|Rep: Cytosolic 80S
ribosomal protein S2; Cytosolic 40S small ribosomal
subunit protein S2 - Ostreococcus lucimarinus (strain
CCE9901), partial (7%)
Length = 553
Score = 274 bits (138), Expect = 3e-72
Identities = 144/146 (98%)
Strand = Plus / Minus
Query: 2940 tgttggtcggggcaggggtgatcgtggtcccaatgatcggtacaacatggatgggcgtgg 2999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgttggtcggggcaggggtgatcgtggtcccaatgatcggtacaacatggatgggcgtgg 218
Query: 3000 acggggacgatttgacaataggagagatgttgcttacagaagtagaggcagaagtcgtag 3059
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 217 acggggacaatttgacaataggagagatgttgcttacagaagtagaggcagaaatcgtag 158
Query: 3060 ccctgaaagagttcgaacatgggact 3085
||||||||||||||||||||||||||
Sbjct: 157 ccctgaaagagttcgaacatgggact 132
>gnl|LJGI|TC63774 similar to UniRef100_Q9SP26 Cluster: P72 DEAD box protein; n=1; Pisum
sativum|Rep: P72 DEAD box protein - Pisum sativum (Garden
pea), partial (39%)
Length = 1473
Score = 81.8 bits (41), Expect = 3e-14
Identities = 131/161 (81%)
Strand = Plus / Plus
Query: 2368 cagtttcggactgggaagtcaccgattttggttgccactgatgttgctgcccgtggactt 2427
|||||||| ||||||| ||| ||| | | || |||||||||||||| || || |||||
Sbjct: 198 cagtttcgaactgggaggtctccggtgcttgtagccactgatgttgcagctcgaggacta 257
Query: 2428 gatattaaggatataagagtggtgatcaactatgatttccctactggagttgaggactat 2487
|| ||||| || || || ||||| |||||||||| || ||||||||||| || || |||
Sbjct: 258 gacattaaagacattagggtggttgtcaactatgactttcctactggagtggaagattat 317
Query: 2488 gttcaccgcattggaagaactgggagggctggtgctactgg 2528
||||| | |||||||| |||||||||||||| || |||||
Sbjct: 318 gttcataggattggaaggactgggagggctggagccactgg 358
>gnl|LJGI|TC68521 similar to UniRef100_A7P045 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (27%)
Length = 1063
Score = 54.0 bits (27), Expect = 6e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 2395 ttggttgccactgatgttgctgcccgtggacttgatatt 2433
||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 93 ttggttgccactgatgtggctgcacgtggtcttgatatt 131