Miyakogusa Predicted Gene

Lj6g3v1586650.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1586650.1 Non Chatacterized Hit- tr|I1MGA5|I1MGA5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.34345 PE,71.26,0,YTH,YTH
domain; YTH DOMAIN-CONTAINING,NULL; YTH (YT521-B HOMOLOGY)
DOMAIN-CONTAINING,NULL,CUFF.59631.1
         (777 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77230 similar to UniRef100_A7NVV9 Cluster: Chromosome...   198   4e-50

>gnl|LJGI|TC77230 similar to UniRef100_A7NVV9 Cluster: Chromosome chr5 scaffold_2,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_2, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (42%)
          Length = 1443

 Score =  198 bits (100), Expect = 4e-50
 Identities = 228/273 (83%)
 Strand = Plus / Plus

                                                                       
Query: 6   tggtccagttgactttaataaggatatggacttttggcagcaggataaatggagtggcag 65
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 91  tggtcctgttgacttcaataaggatatggacttttggcagcaggataaatggaatgggag 150

                                                                       
Query: 66  ctttccagtaaagtggcatatcctaaaagatgtaccaaatggaaatttcaggcacattat 125
           |||||   | |||||||| ||| |||||||||| || |||||    |  |||||||||||
Sbjct: 151 ctttcttttgaagtggcacatcgtaaaagatgtgcctaatggggggtgtaggcacattat 210

                                                                       
Query: 126 tctagagaacaatgnnnnnnngccagtgactaatagccgagatacacaggagataatgta 185
            ||||||||||| |       ||| |||||||||||| |||| ||||| ||||||| |||
Sbjct: 211 actagagaacaacgagaacaagcctgtgactaatagcagagacacacaagagataacgta 270

                                                                       
Query: 186 ttggaaaggattggaaatgctgaaaattttcaaaaatcatactttgaggacatctttgct 245
           | | |||||  |||||||||||| | | ||||||| ||||||||||| ||||||||||||
Sbjct: 271 tagaaaaggtctggaaatgctgagagtattcaaaagtcatactttgaagacatctttgct 330

                                            
Query: 246 tgatgattttatgtactatgaaaaccgtcagaa 278
           |||||| || || || |||||||||||||||||
Sbjct: 331 tgatgacttcatttattatgaaaaccgtcagaa 363



 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 544 gatatttcctccatcttaaagattggttcagtcactattacccc 587
           |||||||| ||  |||||||||||||||||||||| ||||||||
Sbjct: 648 gatatttcttctgtcttaaagattggttcagtcaccattacccc 691