Miyakogusa Predicted Gene

Lj6g3v1538070.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1538070.1 Non Chatacterized Hit- tr|G7IMV9|G7IMV9_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,74.31,0,seg,NULL; DUF4378,Domain of unknown function
DUF4378; VARLMGL,NULL; SUBFAMILY NOT NAMED,NULL; PHOSPH,CUFF.59591.1
         (2781 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP045380 similar to UniRef100_Q8L4X6 Cluster: WD-repeat...   101   2e-20

>gnl|LJGI|BP045380 similar to UniRef100_Q8L4X6 Cluster: WD-repeat protein GhTTG2; n=1;
            Gossypium hirsutum|Rep: WD-repeat protein GhTTG2 -
            Gossypium hirsutum (Upland cotton) (Gossypium mexicanum),
            partial (13%)
          Length = 558

 Score =  101 bits (51), Expect = 2e-20
 Identities = 63/67 (94%)
 Strand = Plus / Minus

                                                                        
Query: 951  acctccttcacatgcagaagaagattcttcttcgaagaaaaaggggagatctatttcact 1010
            |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 392  acctccctcacatgcagaagaagattcttcttcgaagaacaagcggagatctatttcact 333

                   
Query: 1011 tgcgatc 1017
            || ||||
Sbjct: 332  tgagatc 326