Miyakogusa Predicted Gene
- Lj6g3v1513530.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1513530.2 tr|Q2HW32|Q2HW32_MEDTR Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif;
Nit,75.93,0,WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; LISH,LisH
dimerisation mo,CUFF.59554.2
(1773 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP041884 weakly similar to UniRef100_A7PRX2 Cluster: Ch... 944 0.0
gnl|LJGI|FS330577 similar to UniRef100_A7PRX2 Cluster: Chromosom... 898 0.0
gnl|LJGI|TC66714 similar to UniRef100_A7PRX2 Cluster: Chromosome... 884 0.0
gnl|LJGI|TC70086 homologue to UniRef100_Q2HW32 Cluster: Lissence... 161 2e-38
gnl|LJGI|TC82200 homologue to UniRef100_Q2HW32 Cluster: Lissence... 137 3e-31
gnl|LJGI|TC77627 homologue to UniRef100_A7PF76 Cluster: Chromoso... 117 2e-25
gnl|LJGI|TC60845 homologue to UniRef100_Q2HW32 Cluster: Lissence... 94 4e-18
gnl|LJGI|TC77986 homologue to UniRef100_A7QQ63 Cluster: Chromoso... 88 2e-16
>gnl|LJGI|BP041884 weakly similar to UniRef100_A7PRX2 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 476
Score = 944 bits (476), Expect = 0.0
Identities = 476/476 (100%)
Strand = Plus / Plus
Query: 558 caagaacccaagaccgaatccagacatcaaaactttattcactgaccatacttgttcacc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagaacccaagaccgaatccagacatcaaaactttattcactgaccatacttgttcacc 60
Query: 618 tccaaatggagctcatgcacctactcctgtcacccttcctatttcagctggtgcaaggcc 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccaaatggagctcatgcacctactcctgtcacccttcctatttcagctggtgcaaggcc 120
Query: 678 ttcattttttgctccacttggagcacatggtggaccatttacaccagcccctccagctgc 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcattttttgctccacttggagcacatggtggaccatttacaccagcccctccagctgc 180
Query: 738 taatgttaatgctttggcgggatggatggtgaatgcaaatctgtccacatctgctcaatc 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatgttaatgctttggcgggatggatggtgaatgcaaatctgtccacatctgctcaatc 240
Query: 798 atctgtagttgctgcttcctcattctctggtcacccaaatcaaggttctattttgaagca 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atctgtagttgctgcttcctcattctctggtcacccaaatcaaggttctattttgaagca 300
Query: 858 ttcaagaacacctaatactcttggaatgatggattaccaaaataatgatcatgatcatct 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcaagaacacctaatactcttggaatgatggattaccaaaataatgatcatgatcatct 360
Query: 918 aatgaaacggttgcggactgcacattctgttgacgaggtcacaaatcccgctccacctca 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgaaacggttgcggactgcacattctgttgacgaggtcacaaatcccgctccacctca 420
Query: 978 acaagtgtcttggtcacttgatgagcttcctagaactgttgtttgtaccttacatc 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaagtgtcttggtcacttgatgagcttcctagaactgttgtttgtaccttacatc 476
>gnl|LJGI|FS330577 similar to UniRef100_A7PRX2 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 640
Score = 898 bits (453), Expect = 0.0
Identities = 456/457 (99%)
Strand = Plus / Plus
Query: 1 atgtcatctttgagtagggaattggtgcttctcattcttcaatttcttgaggaggagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atgtcatctttgagtagggaattggtgcttctcattcttcaatttcttgaggaggagaag 243
Query: 61 ttcaaggacactgtacacaagcttgagcaagaatctgggttctacttcaatatgaagtat 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 244 ttcaaggacactgtacacaagcttgagcatgaatctgggttctacttcaatatgaagtat 303
Query: 121 tttgaagagaaggccctggctggagagtgggatgaggttgagaagtatctgtctgggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttgaagagaaggccctggctggagagtgggatgaggttgagaagtatctgtctgggttt 363
Query: 181 actaaagtggatgacaatcgatattccatgaaaatattctttgagattaggaagcagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 actaaagtggatgacaatcgatattccatgaaaatattctttgagattaggaagcagaag 423
Query: 241 tatcttgaagccttggacaggcgtaacaaaccgagggctgttgaaattctggtgaatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatcttgaagccttggacaggcgtaacaaaccgagggctgttgaaattctggtgaatgat 483
Query: 301 ttgaaaagtttttcaacatttaatgaagatttgtacaaagaactaacacatcttctaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttgaaaagtttttcaacatttaatgaagatttgtacaaagaactaacacatcttctaacc 543
Query: 361 cttgagaacttcagggaaaatgagcagttatcgaagtatgctgatactaaatcagctcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttgagaacttcagggaaaatgagcagttatcgaagtatgctgatactaaatcagctcga 603
Query: 421 aacataatgcttttggagcttaagaaattgatagaag 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 604 aacataatgcttttggagcttaagaaattgatagaag 640
>gnl|LJGI|TC66714 similar to UniRef100_A7PRX2 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 1326
Score = 884 bits (446), Expect = 0.0
Identities = 859/996 (86%), Gaps = 3/996 (0%)
Strand = Plus / Plus
Query: 16 agggaattggtgcttctcattcttcaatttcttgaggaggagaagttcaaggacactgta 75
|||||||||||| | ||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 331 agggaattggtgttcctcattcttcaatttctcgaggaagagaaattcaaggaagctgta 390
Query: 76 cacaagcttgagcaagaatctgggttctacttcaatatgaagtattttgaagagaaggcc 135
|||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||| |||
Sbjct: 391 cacaagctggagcaagagtctggtttcttcttcaatatgaagtattttgacgagaaagcc 450
Query: 136 ctggctggagagtgggatgaggttgagaagtatctgtctgggtttactaaagtggatgac 195
|| ||||||||||||||||||||||||||||| || |||||||| | ||||| ||||||
Sbjct: 451 cttgctggagagtgggatgaggttgagaagtacctatctgggttcataaaagtcgatgac 510
Query: 196 aatcgatattccatgaaaatattctttgagattaggaagcagaagtatcttgaagccttg 255
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 511 aatcgatattccatgaaaactttctttgagattaggaagcagaagtatcttgaagccctt 570
Query: 256 gacaggcgtaacaaaccgagggctgttgaaattctggtgaatgatttgaaaagtttttca 315
|||||| | ||||| || ||||||||| || |||||||||||||||||| |||| ||
Sbjct: 571 gacaggaatgacaaagtgaaggctgttgagatactggtgaatgatttgaaagtttttgca 630
Query: 316 acatttaatgaagatttgtacaaagaactaacacatcttctaacccttgagaacttcagg 375
|| ||||||||||| |||| ||||||| | || || ||| |||||||||| |||||||||
Sbjct: 631 acgtttaatgaagaattgttcaaagaaattacgcagcttataacccttgacaacttcagg 690
Query: 376 gaaaatgagcagttatcgaagtatgctgatactaaatcagctcgaaacataatgcttttg 435
|||||||| |||||||| ||||||| ||||||||| |||||||| | ||||||||| ||
Sbjct: 691 gaaaatgaacagttatcaaagtatggtgatactaagtcagctcggagcataatgctctta 750
Query: 436 gagcttaagaaattgatagaagcaaatcccctctttcgagacaagcttatacttccttcg 495
|||||||||||| |||| |||||||||||||||||| |||| ||||||||| | |||||
Sbjct: 751 gagcttaagaaactgattgaagcaaatcccctctttagagataagcttatattcccttct 810
Query: 496 ttgagggcatcacggttacgaaccctggttaatcaaagtttaaattggcagcatcagctg 555
|||| ||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 811 ttgaaggcctcaaggttacgaaccctgattaatcaaagtttgaattggcagcaccagctg 870
Query: 556 tgcaagaacccaagaccgaatccagacatcaaaactttattcactgaccatacttgttca 615
||||||||||| || || ||||||||||| |||||| |||| | |||||| |||||||||
Sbjct: 871 tgcaagaacccgaggccaaatccagacattaaaactctatttattgaccacacttgttca 930
Query: 616 cctccaaatggagctcatgcacctactcctgtcacccttcctatttcagctggtgcaagg 675
|| |||||||||||| |||||| ||||||| | | |||||| | |||| | |||||||
Sbjct: 931 ccctcaaatggagctcgtgcacccactcctggccctcttcctgtcacagcggttgcaagg 990
Query: 676 ccttcattttttgctccacttggagcacatggtggaccatttacaccagcccctccagct 735
||||||| || |||||| ||||| |||| |||||||||||| |||||||||| | |||
Sbjct: 991 ccttcatcttatgctccgcttggggcacctggtggaccattcccaccagccccgactgct 1050
Query: 736 gctaatgttaatgctttggcgggatggatggtgaatgcaaatctgtccacatctgctcaa 795
|||||||||||||| || |||||||||||| |||||||||||| ||| ||||| ||||
Sbjct: 1051 gctaatgttaatgcattagcgggatggatgatgaatgcaaatccttcctcatctattcaa 1110
Query: 796 tcatctgtagttgctgcttcctcattctctggtcacccaaatcaaggttctattttgaag 855
||| ||| | |||||||||| ||| | |||||| ||||||||||| ||| | ||||||
Sbjct: 1111 tcacctgcacttgctgcttcatcaatgcctggtcccccaaatcaagtatctgtcttgaag 1170
Query: 856 cattcaagaacacct---aatactcttggaatgatggattaccaaaataatgatcatgat 912
||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 1171 catccaagaacaccttccaatactcttggaatgatggattatcaaaatgctgatcatgat 1230
Query: 913 catctaatgaaacggttgcggactgcacattctgttgacgaggtcacaaatcccgctcca 972
|||||||||||||| || ||| | |||| |||||||| |||||||| |||| |||||
Sbjct: 1231 catctaatgaaacgtttacggtcagcaccatctgttgatgaggtcacttatcctgctccc 1290
Query: 973 cctcaacaagtgtcttggtcacttgatgagcttcct 1008
|| ||||||| ||||||||||||||||| ||||||
Sbjct: 1291 ccccaacaagcctcttggtcacttgatgaccttcct 1326
>gnl|LJGI|TC70086 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago
truncatula|Rep: Lissencephaly type-1-like homology
motif; CTLH, C-terminal to LisH motif; Nitrous oxide
reductase, N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (11%)
Length = 655
Score = 161 bits (81), Expect = 2e-38
Identities = 204/245 (83%)
Strand = Plus / Plus
Query: 7 tctttgagtagggaattggtgcttctcattcttcaatttcttgaggaggagaagttcaag 66
|||||||| |||||||||||| ||||||| || || ||||| || ||||||||||||||
Sbjct: 264 tctttgagcagggaattggtgtttctcatactccagtttctggatgaggagaagttcaaa 323
Query: 67 gacactgtacacaagcttgagcaagaatctgggttctacttcaatatgaagtattttgaa 126
|| |||| ||||| |||||| ||||||| ||||||| |||||||||||||| |||||
Sbjct: 324 gagtctgttcacaaacttgagaaagaatcagggttctttttcaatatgaagtactttgag 383
Query: 127 gagaaggccctggctggagagtgggatgaggttgagaagtatctgtctgggtttactaaa 186
|| |||| | |||||| || ||||| || ||||||||||| | | ||||||||||||
Sbjct: 384 gaaaaggtgcaggctggcgaatgggaagaagttgagaagtacttaacagggtttactaaa 443
Query: 187 gtggatgacaatcgatattccatgaaaatattctttgagattaggaagcagaagtatctt 246
|| || || ||| |||| || ||||||||||||||||| || || ||||||||||||||
Sbjct: 444 gttgacgataatagatactcaatgaaaatattctttgaaatcagaaagcagaagtatctg 503
Query: 247 gaagc 251
|||||
Sbjct: 504 gaagc 508
>gnl|LJGI|TC82200 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago
truncatula|Rep: Lissencephaly type-1-like homology
motif; CTLH, C-terminal to LisH motif; Nitrous oxide
reductase, N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (24%)
Length = 952
Score = 137 bits (69), Expect = 3e-31
Identities = 201/245 (82%)
Strand = Plus / Plus
Query: 7 tctttgagtagggaattggtgcttctcattcttcaatttcttgaggaggagaagttcaag 66
|||||||| || ||||||||| ||||||| || || ||||| || |||||||| |||||
Sbjct: 135 tctttgagcagagaattggtgtttctcatactccagtttctggatgaggagaacttcaaa 194
Query: 67 gacactgtacacaagcttgagcaagaatctgggttctacttcaatatgaagtattttgaa 126
|| |||| |||||||||||||||||||||| ||| | ||||| |||||||| |||||
Sbjct: 195 gagtctgtgcacaagcttgagcaagaatctgcgttttttttcaacatgaagtactttgag 254
Query: 127 gagaaggccctggctggagagtgggatgaggttgagaagtatctgtctgggtttactaaa 186
|| || | | |||||| || ||||| || ||||||||||| | || |||||||| |||
Sbjct: 255 gaaaaagtgcaggctggcgaatgggaagaagttgagaagtacttatcagggtttaccaaa 314
Query: 187 gtggatgacaatcgatattccatgaaaatattctttgagattaggaagcagaagtatctt 246
|| || || ||| |||| || ||||||||||||||||| || ||||||||||| |||||
Sbjct: 315 gttgacgataatagatactcaatgaaaatattctttgaaatcaggaagcagaaatatctg 374
Query: 247 gaagc 251
|||||
Sbjct: 375 gaagc 379
Score = 56.0 bits (28), Expect = 8e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 524 ttaatcaaagtttaaattggcagcatcagctgtgcaagaacccaagaccgaatccagaca 583
||||||||||| | || |||||||||||||| || || ||||||| || |||||||| |
Sbjct: 652 ttaatcaaagtctgaactggcagcatcagctttgtaaaaacccaaatccaaatccagata 711
Query: 584 tcaaaactttattcac 599
| || |||||||||||
Sbjct: 712 taaagactttattcac 727
>gnl|LJGI|TC77627 homologue to UniRef100_A7PF76 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 535
Score = 117 bits (59), Expect = 2e-25
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 145 gagtgggatgaggttgagaagtatctgtctgggtttactaaagtggatgacaatcgatat 204
|||||||||||||| || ||||| ||||||| ||||| || |||||||||||| ||||
Sbjct: 385 gagtgggatgaggtggaaaagtacttgtctggttttaccaaggtggatgacaatagatac 444
Query: 205 tccatgaaaatattctttgagattaggaagcagaagtatcttgaagc 251
|||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 445 tccatgaagatcttctttgagattaggaagcagaagtatctagaagc 491
>gnl|LJGI|TC60845 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep:
Lissencephaly type-1-like homology motif; CTLH,
C-terminal to LisH motif; Nitrous oxide reductase,
N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (23%)
Length = 798
Score = 93.7 bits (47), Expect = 4e-18
Identities = 212/267 (79%)
Strand = Plus / Plus
Query: 1246 tggagcccagatgggaattttattggggttgcttttacgaagcatttgattcatttgtat 1305
|||||||| ||||| | |||| | || ||||||||||| || |||||||||||||| |||
Sbjct: 532 tggagccctgatggaagttttgtaggtgttgcttttactaaacatttgattcatttatat 591
Query: 1306 acctatcaagcacctaatgacctacagcagcgtttggagattgatgcccatgtcggtagt 1365
|||| | | | ||||||||| ||||| | ||| ||||||||||| | ||| ||
Sbjct: 592 gcctacactggatcaaatgacctagcccagcgcatagaggttgatgcccatattggtggt 651
Query: 1366 gttaatgacttggtattttcatatccaaacaaacagctatgcattgtaacttgtggagat 1425
|| ||||| |||| |||| | ||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 652 gtgaatgatttggcatttgctcatccaaataaacagctatgtattgtgacttgtggggac 711
Query: 1426 gataagttaataaaggtgtgggatttaaatgggcagaaactctttaactttgaaggtcat 1485
||||| || ||||||||||||||| |||||| | | ||| |||| |||||| || ||
Sbjct: 712 gataaattgataaaggtgtgggatacaaatggccgaagactatttacctttgaggggtat 771
Query: 1486 ggagcacctgtttattctgtttgtcct 1512
| |||||||| |||||| ||||||||
Sbjct: 772 gaggcacctgtatattctatttgtcct 798
>gnl|LJGI|TC77986 homologue to UniRef100_A7QQ63 Cluster: Chromosome undetermined
scaffold_141, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_141,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 702
Score = 87.7 bits (44), Expect = 2e-16
Identities = 166/204 (81%), Gaps = 2/204 (0%)
Strand = Plus / Plus
Query: 43 tttcttgaggaggagaagttcaaggacactgtacacaagcttgagcaagaatctgggttc 102
||||| || ||||| |||||||| || || || ||||||||||||||||| ||||||||
Sbjct: 249 tttctggatgaggaaaagttcaaagagacagttcacaagcttgagcaagagtctgggttt 308
Query: 103 tacttcaatatgaagtattttgaaga-gaaggccctggctggagagtgggatgaggttga 161
| |||||| |||||||||||||| || |||| | | ||| | ||||| ||||||||
Sbjct: 309 ttcttcaacatgaagtattttgaggatgaagtgcat-aatgggaattgggaagaggttga 367
Query: 162 gaagtatctgtctgggtttactaaagtggatgacaatcgatattccatgaaaatattctt 221
||| || || ||||| || || ||||| ||||| ||| | ||||||||||| ||||| ||
Sbjct: 368 gaaatacctctctggattcacaaaagtagatgataataggtattccatgaagatattttt 427
Query: 222 tgagattaggaagcagaagtatct 245
||||| ||||| |||||||||||
Sbjct: 428 cgagataaggaaacagaagtatct 451