Miyakogusa Predicted Gene
- Lj6g3v1513530.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1513530.1 tr|G7JMQ4|G7JMQ4_MEDTR WD repeat-containing
protein OS=Medicago truncatula GN=MTR_4g120900 PE=4 SV=1,75.3,0,WD40
repeats,WD40 repeat; SUBFAMILY NOT NAMED,NULL; WD40 REPEAT
PROTEIN,NULL; WD40,WD40 repeat; WD40,CUFF.59554.1
(1650 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63187 similar to UniRef100_Q2HW32 Cluster: Lissenceph... 1007 0.0
gnl|LJGI|TC64360 similar to UniRef100_Q2HW32 Cluster: Lissenceph... 601 e-171
gnl|LJGI|DC599584 similar to UniRef100_Q9LRZ0 Cluster: Genomic D... 242 6e-63
gnl|LJGI|TC78269 similar to UniRef100_Q9LRZ0 Cluster: Genomic DN... 125 9e-28
gnl|LJGI|BG662118 homologue to UniRef100_Q2HW32 Cluster: Lissenc... 121 1e-26
gnl|LJGI|TC77203 similar to UniRef100_Q2HW32 Cluster: Lissenceph... 92 1e-17
gnl|LJGI|BP075090 84 3e-15
gnl|LJGI|BW595831 similar to UniRef100_A8MR25 Cluster: Uncharact... 70 5e-11
>gnl|LJGI|TC63187 similar to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep:
Lissencephaly type-1-like homology motif; CTLH,
C-terminal to LisH motif; Nitrous oxide reductase,
N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (12%)
Length = 772
Score = 1007 bits (508), Expect = 0.0
Identities = 508/508 (100%)
Strand = Plus / Plus
Query: 1143 gcctgctggaaaggcacctgttggtgacactcgtgtgcaattccatattgatcaagtaaa 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctgctggaaaggcacctgttggtgacactcgtgtgcaattccatattgatcaagtaaa 60
Query: 1203 gttgctggtatcccatgagacgcagctagcaatatatgatgcttcaaaaatggaattgat 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttgctggtatcccatgagacgcagctagcaatatatgatgcttcaaaaatggaattgat 120
Query: 1263 tcggcagtgggtgccacaagatggattttctggttccatatcctctgcaacatattcctg 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcggcagtgggtgccacaagatggattttctggttccatatcctctgcaacatattcctg 180
Query: 1323 caacagccaactagtttatgctgctttcactgatggaaatattggagtatttgatgctga 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caacagccaactagtttatgctgctttcactgatggaaatattggagtatttgatgctga 240
Query: 1383 cagcctgagactaagatgtcgtatagcttcatctgcatacctacatcagacttcatcaaa 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagcctgagactaagatgtcgtatagcttcatctgcatacctacatcagacttcatcaaa 300
Query: 1443 cagccaaaatgtgtaccctgttgttgtcacagcacatccacaggaaccaaatcaatttgc 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagccaaaatgtgtaccctgttgttgtcacagcacatccacaggaaccaaatcaatttgc 360
Query: 1503 agttggactttcagatgggtctatcaaggttatagagcctacagagtctgaaggaaggtg 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agttggactttcagatgggtctatcaaggttatagagcctacagagtctgaaggaaggtg 420
Query: 1563 gggaattaaggaacctgttgataatggtaggacagcctcaccctcaatcacaaacaaccc 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggaattaaggaacctgttgataatggtaggacagcctcaccctcaatcacaaacaaccc 480
Query: 1623 cactcctgagcagctccaaagatgatat 1650
||||||||||||||||||||||||||||
Sbjct: 481 cactcctgagcagctccaaagatgatat 508
>gnl|LJGI|TC64360 similar to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep:
Lissencephaly type-1-like homology motif; CTLH,
C-terminal to LisH motif; Nitrous oxide reductase,
N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (18%)
Length = 982
Score = 601 bits (303), Expect = e-171
Identities = 523/595 (87%), Gaps = 1/595 (0%)
Strand = Plus / Plus
Query: 947 tggaagattcaactattcatattaacaatgttagggtggacgaggtgaaatctaaattga 1006
|||| ||| ||||||||||| || |||||||||||||||| ||||| |||| |||||||
Sbjct: 4 tggacgatgcaactattcatttttacaatgttagggtggatgaggtcaaatacaaattga 63
Query: 1007 agggtcaccagaagcacatcaccggtttagcattttcaactcaacttaataccttggttt 1066
||||||||||||||| ||| ||||||||||| |||| |||||| || || | ||||||||
Sbjct: 64 agggtcaccagaagcgcattaccggtttagcttttt-aactcatctgaacatcttggttt 122
Query: 1067 catcaggtgctgatgcccagcttttcttttggagcattgattcctgggataagaagaaat 1126
|||| ||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct: 123 catcttctgctgatgctcagctttgcttttggagtattgattcatgggataagaagaaat 182
Query: 1127 cactgtcaatcccaatgcctgctggaaaggcacctgttggtgacactcgtgtgcaattcc 1186
|||| ||| ||| | |||| |||||||| || |||| |||||| ||||| || | ||||
Sbjct: 183 cactatcactccaattgccagctggaaaagcgcctgctggtgatactcgagtatacttcc 242
Query: 1187 atattgatcaagtaaagttgctggtatcccatgagacgcagctagcaatatatgatgctt 1246
|||| |||||||| | || ||||||| |||||| || ||||||||| |||| |||||||
Sbjct: 243 atatcgatcaagtgcacttactggtatgccatgaaacacagctagcagtatacgatgctt 302
Query: 1247 caaaaatggaattgattcggcagtgggtgccacaagatggattttctggttccatatcct 1306
|||||||||||||||||||||||||||| || |||||||| || |||||||||||| |||
Sbjct: 303 caaaaatggaattgattcggcagtgggttccgcaagatggtttctctggttccatagcct 362
Query: 1307 ctgcaacatattcctgcaacagccaactagtttatgctgctttcactgatggaaatattg 1366
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 363 ctgcaacatattcctgcaatggccaactagtttatgctgccttcactgatggaaatattg 422
Query: 1367 gagtatttgatgctgacagcctgagactaagatgtcgtatagcttcatctgcatacctac 1426
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 423 gagtattcgatgctgacagcctgagactaagatgtcggatagcttcgtctgcatacctac 482
Query: 1427 atcagacttcatcaaacagccaaaatgtgtaccctgttgttgtcacagcacatccacagg 1486
||||||| |||||||| ||||||||| | | ||| |||||||| |||||||||| ||||
Sbjct: 483 atcagacatcatcaaatagccaaaatatattcccagttgttgttgcagcacatcctcagg 542
Query: 1487 aaccaaatcaatttgcagttggactttcagatgggtctatcaaggttatagagcc 1541
| ||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 543 agccaaatcaatttgcagttggactttcagacggcggtattaaggttatagagcc 597
Score = 73.8 bits (37), Expect = 3e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1584 taatggtaggacagcctcaccctcaatcacaaacaaccccactcctgagcagctccaaag 1643
|||||| |||||||||||||| ||||| || |||||| | ||| ||||||||||||||||
Sbjct: 658 taatgggaggacagcctcaccatcaattactaacaactcaacttctgagcagctccaaag 717
Query: 1644 atgat 1648
|||||
Sbjct: 718 atgat 722
>gnl|LJGI|DC599584 similar to UniRef100_Q9LRZ0 Cluster: Genomic DNA, chromosome 3, TAC
clone:K20I9; n=1; Arabidopsis thaliana|Rep: Genomic DNA,
chromosome 3, TAC clone:K20I9 - Arabidopsis thaliana
(Mouse-ear cress), partial (3%)
Length = 129
Score = 242 bits (122), Expect = 6e-63
Identities = 129/130 (99%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 492 agcttgggaattggcagaaatagttgatcctgttcagtgtcgaatggtcactgtgccaga 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcttgggaattggcagaaatagttgatcctgttcagtgtcgaatggtcactgtgccaga 60
Query: 552 tagtatgggtccccttaacaaggttgctcgtcttctttacacaaattctggggctggtct 611
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagtatgggtcccctt-acaaggttgctcgtcttctttacacaaattctggggctggtct 119
Query: 612 tctggctctt 621
||||||||||
Sbjct: 120 tctggctctt 129
>gnl|LJGI|TC78269 similar to UniRef100_Q9LRZ0 Cluster: Genomic DNA, chromosome 3, TAC
clone:K20I9; n=1; Arabidopsis thaliana|Rep: Genomic DNA,
chromosome 3, TAC clone:K20I9 - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 412
Score = 125 bits (63), Expect = 9e-28
Identities = 90/99 (90%)
Strand = Plus / Plus
Query: 567 taacaaggttgctcgtcttctttacacaaattctggggctggtcttctggctcttggttc 626
||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||| |
Sbjct: 305 taacaaggttgttcgtcttctttacaccaattccggggctggccttctggctcttggtgc 364
Query: 627 aaaagggtttcagaggctgtggaaatggagccgcaatga 665
||||||| | |||| |||||||||||||||||| |||||
Sbjct: 365 aaaagggatccagaagctgtggaaatggagccgtaatga 403
>gnl|LJGI|BG662118 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep:
Lissencephaly type-1-like homology motif; CTLH,
C-terminal to LisH motif; Nitrous oxide reductase,
N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (12%)
Length = 393
Score = 121 bits (61), Expect = 1e-26
Identities = 256/321 (79%)
Strand = Plus / Plus
Query: 787 ctctcaaagaatgattcctatgttatgtcttcatgtggaggaaaaatttcactgttcaac 846
|||||||| ||||| || ||||| |||||| | ||||| ||||| ||||||| || |||
Sbjct: 4 ctctcaaaaaatgactcatatgtcatgtctgcctgtggcggaaaggtttcactatttaac 63
Query: 847 atgatgacatttaagataatgacaacttttatgagacctcctccttgctcaaccttcctt 906
||||||||||| ||| ||||||| || |||||| ||| |||||| || ||||| ||
Sbjct: 64 atgatgacattcaaggtaatgaccacatttatgcaaccacctcctgcatctacctttcta 123
Query: 907 gcatttcaccctcaagataataacatcattgcaattggaatggaagattcaactattcat 966
|| || || ||||| ||||| ||||| ||||| ||||| ||||| |||||||| |||||
Sbjct: 124 gctttccatcctcaggataacaacattattgccattgggatggaggattcaaccattcac 183
Query: 967 attaacaatgttagggtggacgaggtgaaatctaaattgaagggtcaccagaagcacatc 1026
|| | ||||| || ||||| ||||||||||| ||||| ||||||||||| |||| ||
Sbjct: 184 atctataatgtcagagtggatgaggtgaaatcaaaattaaagggtcaccacaagcgaata 243
Query: 1027 accggtttagcattttcaactcaacttaataccttggtttcatcaggtgctgatgcccag 1086
|| ||||| || || ||||| | ||||| | | | || ||||| ||||||||||| ||
Sbjct: 244 actggtttggccttctcaaccaatcttaacatccttgtctcatctggtgctgatgctcaa 303
Query: 1087 cttttcttttggagcattgat 1107
|||| | | ||||||||||||
Sbjct: 304 ctttgcgtgtggagcattgat 324
>gnl|LJGI|TC77203 similar to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep:
Lissencephaly type-1-like homology motif; CTLH,
C-terminal to LisH motif; Nitrous oxide reductase,
N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (31%)
Length = 1563
Score = 91.7 bits (46), Expect = 1e-17
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 922 gataataacatcattgcaattggaatggaagattcaactattcatattaacaatgttagg 981
||||| ||||| || || ||||| ||||| |||||||| ||||| || | ||||| ||
Sbjct: 327 gataacaacattatagccattgggatggatgattcaaccattcacatctataatgtcaga 386
Query: 982 gtggacgaggtgaaatctaaattgaagggtcaccagaagcacatcaccggtttagcattt 1041
|||| ||||||||||| |||||||||||||||||||||| || || |||||||| |||
Sbjct: 387 gtggctgaggtgaaatcaaaattgaagggtcaccagaagcgaattactggtttagccttt 446
Query: 1042 tcaactcaacttaataccttggtttcatcaggtgctgatgcccagcttttcttttggagc 1101
||||| | ||| | | | |||||||||| ||||||||||| || |||| | ||||||
Sbjct: 447 tcaaccaatcttcacatcctggtttcatctggtgctgatgctcaactttgtgtgtggagc 506
Query: 1102 attgat 1107
||||||
Sbjct: 507 attgat 512
>gnl|LJGI|BP075090
Length = 483
Score = 83.8 bits (42), Expect = 3e-15
Identities = 88/102 (86%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 1417 gcatacctacatcagacttcatcaaacagccaaaatgtgtaccctgttgttgtcacagca 1476
||||||||||||||||| |||||||| ||||||||| | | || || ||||| |||||
Sbjct: 483 gcatacctacatcagacatcatcaaatagccaaaatatatttccagtcgttgttgcagca 424
Query: 1477 cat-ccacaggaaccaaatcaatttgcagttggactttcaga 1517
||| || ||||| ||||||| |||||||||||||||||||||
Sbjct: 423 catccctcaggagccaaatccatttgcagttggactttcaga 382
>gnl|LJGI|BW595831 similar to UniRef100_A8MR25 Cluster: Uncharacterized protein
At1g80490.2; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At1g80490.2 - Arabidopsis
thaliana (Mouse-ear cress), partial (13%)
Length = 486
Score = 69.9 bits (35), Expect = 5e-11
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 793 aagaatgattcctatgttatgtcttcatgtggaggaaaaatttcactgttcaacatgatg 852
||||||||||| ||||| |||||| | | ||| |||||||| || || ||||| ||||||
Sbjct: 293 aagaatgattcgtatgtcatgtctgcttctgggggaaaaatctccctattcaatatgatg 352
Query: 853 acatttaagataatgacaacttt 875
||||| |||| ||||||||||||
Sbjct: 353 acattcaagacaatgacaacttt 375