Miyakogusa Predicted Gene

Lj6g3v1442300.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1442300.1 Non Chatacterized Hit- tr|B9SU07|B9SU07_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,36.71,3e-17,seg,NULL; Mitochondrial termination factor
repeats,Mitochodrial transcription termination factor-rel,CUFF.59487.1
         (1362 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62774                                                      159   6e-38

>gnl|LJGI|TC62774 
          Length = 800

 Score =  159 bits (80), Expect = 6e-38
 Identities = 145/166 (87%), Gaps = 3/166 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1124 agaaaaggatcattccaagggctgcagttctgcaatttcttcttaagaaaggtttgcgaa 1183
            ||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||
Sbjct: 501  agaaaaggatcattccaagggttgtagtcctgcaatttcttctcaagaaaggtttgcgaa 560

                                                                        
Query: 1184 aaaagaattcaagcttaattaagccatttagcatgccagaggaggagtttctgaacaagt 1243
            |||||||| |||||||| ||  |||||||| |  |||||||||| | |||| ||||||||
Sbjct: 561  aaaagaatgcaagcttagttgtgccatttaccgggccagaggagaattttcagaacaagt 620

                                                          
Query: 1244 ttgttctctgttttgtggaggagtctgcttgtctattgaagctgta 1289
            ||||||||||||||   ||| ||||||||| ||||||  |||||||
Sbjct: 621  ttgttctctgtttt---gagaagtctgcttatctattatagctgta 663