Miyakogusa Predicted Gene
- Lj6g3v1333190.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1333190.3 Non Chatacterized Hit- tr|J3N9K8|J3N9K8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB11G2,34.71,4e-19,DNA
BINDING / DNA-DIRECTED RNA POLYMERASE,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; RNA_pol_I_A49,RNA p,CUFF.59368.3
(495 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67580 weakly similar to UniRef100_A7P6N8 Cluster: Chr... 981 0.0
gnl|LJGI|AV769247 similar to UniRef100_A7P6N8 Cluster: Chromosom... 117 7e-26
gnl|LJGI|AV779545 similar to UniRef100_A7P6N8 Cluster: Chromosom... 117 7e-26
>gnl|LJGI|TC67580 weakly similar to UniRef100_A7P6N8 Cluster: Chromosome chr9
scaffold_7, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr9 scaffold_7, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 999
Score = 981 bits (495), Expect = 0.0
Identities = 495/495 (100%)
Strand = Plus / Plus
Query: 1 atgttgcaacttggagaggaagcagacttcagtgcttacccaacttttatttgcaacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atgttgcaacttggagaggaagcagacttcagtgcttacccaacttttatttgcaacagg 348
Query: 61 atagcaaggttgaagcagattaaggatgagtcagaaaagaagaagatttcttgcatatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atagcaaggttgaagcagattaaggatgagtcagaaaagaagaagatttcttgcatatac 408
Query: 121 tcatacatcaatcatcttataaagtttaaagatcagcacactttggatggtgtttcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcatacatcaatcatcttataaagtttaaagatcagcacactttggatggtgtttcctct 468
Query: 181 gcaaagagccataaaattccccccattctgcgtcataaattttcatcaatgtttggtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gcaaagagccataaaattccccccattctgcgtcataaattttcatcaatgtttggtgtt 528
Query: 241 tttgaatcaaaaagtctgcctcccgacaagttaagtcttctcatttgttatgtcttggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tttgaatcaaaaagtctgcctcccgacaagttaagtcttctcatttgttatgtcttggtg 588
Query: 301 ctgactcttttctgtgatgaattccaaactgactacacagatatatcaaaggatctgagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctgactcttttctgtgatgaattccaaactgactacacagatatatcaaaggatctgagg 648
Query: 361 aagggtgaatcgttggtgagggattgttataataaattgggttgcaaaattccaccccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aagggtgaatcgttggtgagggattgttataataaattgggttgcaaaattccaccccag 708
Query: 421 aaaaagatttgcacgcttcctgtccctcttaagtttcctcctgattcgaaccaaaggaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaaaagatttgcacgcttcctgtccctcttaagtttcctcctgattcgaaccaaaggaag 768
Query: 481 cgaaaaaggtagatg 495
|||||||||||||||
Sbjct: 769 cgaaaaaggtagatg 783
>gnl|LJGI|AV769247 similar to UniRef100_A7P6N8 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 392
Score = 117 bits (59), Expect = 7e-26
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 283 atttgttatgtcttggtgctgactcttttctgtgatgaattccaaactgactacacagat 342
|||||||||||| |||||||||||||||||| ||||||||||| ||||| |||| |||||
Sbjct: 389 atttgttatgtcctggtgctgactcttttctttgatgaattccgaactggctacccagat 330
Query: 343 atatcaaaggatctgagga 361
|||||||||||||||||||
Sbjct: 329 atatcaaaggatctgagga 311
>gnl|LJGI|AV779545 similar to UniRef100_A7P6N8 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 471
Score = 117 bits (59), Expect = 7e-26
Identities = 131/155 (84%)
Strand = Plus / Minus
Query: 207 tctgcgtcataaattttcatcaatgtttggtgtttttgaatcaaaaagtctgcctcccga 266
||||||| ||||||||||||| |||| ||||| | |||||| | ||| |||||| |||
Sbjct: 461 tctgcgttataaattttcatccatgtctggtgctgctgaatccagaaggctgccttacga 402
Query: 267 caagttaagtcttctcatttgttatgtcttggtgctgactcttttctgtgatgaattcca 326
|||| | ||| || ||||||||||| |||||||||||||||||| ||||| |||||
Sbjct: 401 tgagttgaatctgcttatttgttatgttctggtgctgactcttttctctgatgtattccg 342
Query: 327 aactgactacacagatatatcaaaggatctgagga 361
|||||||||||| |||||||| |||||||||||||
Sbjct: 341 aactgactacaccgatatatccaaggatctgagga 307
Score = 69.9 bits (35), Expect = 1e-11
Identities = 52/57 (91%), Gaps = 3/57 (5%)
Strand = Plus / Minus
Query: 432 cacgcttcctgtccctcttaagtttcctcctgattcgaaccaaaggaagcgaaaaag 488
|||||||||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 228 cacgcttcctgtccctcttaagtt---tcctgattcgaagccaaggaagcgaaaaag 175