Miyakogusa Predicted Gene
- Lj6g3v1331890.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1331890.1 Non Chatacterized Hit- tr|I1JRP0|I1JRP0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57407 PE,46.15,3e-19,K
homology RNA-binding domain,K Homology domain; KH DOMAIN CONTAINING
RNA BINDING PROTEIN,NULL; no d,CUFF.59361.1
(972 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57429 similar to UniRef100_A7QUD9 Cluster: Chromosome... 1439 0.0
gnl|LJGI|TC72222 similar to UniRef100_A7QUD9 Cluster: Chromosome... 226 2e-58
>gnl|LJGI|TC57429 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (71%)
Length = 1840
Score = 1439 bits (726), Expect = 0.0
Identities = 729/730 (99%)
Strand = Plus / Plus
Query: 74 acgctgccgcagccaccgccccatccactcaagagcccgagacagaagctgaagacgccc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 acgctgccgcagccaccgccccatccactcaagagcccgagacagaagctgaagacgccc 217
Query: 134 ctgacaccaccgcggacactactccaccggaaaagaaatggccaggctggccaggggact 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctgacaccaccgcggacactactccaccggaaaagaaatggccaggctggccaggggact 277
Query: 194 gcgtttaccgtcttgtcgtccctgtgggcaaggtgggcagcatcatcggccgcaagggag 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcgtttaccgtcttgtcgtccctgtgggcaaggtgggcagcatcatcggccgcaagggag 337
Query: 254 agctcatcaagaagatctgcgaagagactcgagctcgcgttcgcgtcctcgaggcttccg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agctcatcaagaagatctgcgaagagactcgagctcgcgttcgcgtcctcgaggcttccg 397
Query: 314 ttggcacgcctgatcgaatcgtactcatatcagggaaggaagagctagatgcagctcttt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttggcacgcctgatcgaatcgtactcatatcagggaaggaagagctagatgcagctcttt 457
Query: 374 cgcctgcaatggatgcggttataagggtattcaagcgcgtctctgggctatcggaagctg 433
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cacctgcaatggatgcggttataagggtattcaagcgcgtctctgggctatcggaagctg 517
Query: 434 atggtgagattaaagggtctgctgctgctgctacattctgttctatccgtttattgacgg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atggtgagattaaagggtctgctgctgctgctacattctgttctatccgtttattgacgg 577
Query: 494 cggcaacacaggctatcaatttgataggaaagcaaggttcaacaattagagccatacatg 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cggcaacacaggctatcaatttgataggaaagcaaggttcaacaattagagccatacatg 637
Query: 554 agaataccggcgcttctattaaagtactgtcaggagatgaggtgcaatcttttgctactg 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agaataccggcgcttctattaaagtactgtcaggagatgaggtgcaatcttttgctactg 697
Query: 614 cggatgagaggatcatagaattgcagggagaagccttgaaggtccttaatgcgctggaag 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cggatgagaggatcatagaattgcagggagaagccttgaaggtccttaatgcgctggaag 757
Query: 674 ctgtggttggccatctgaggaaatttttggttgaccacagtgttcttcccttatttgaga 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctgtggttggccatctgaggaaatttttggttgaccacagtgttcttcccttatttgaga 817
Query: 734 aaacttacaatacgcccatcgcacaagaccgtcaagcagagacctggtctaacaagtcat 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 aaacttacaatacgcccatcgcacaagaccgtcaagcagagacctggtctaacaagtcat 877
Query: 794 cgctgcacac 803
||||||||||
Sbjct: 878 cgctgcacac 887
Score = 335 bits (169), Expect = 3e-91
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 804 gatatgccgccttcagcaaaaagggattctgtctttgtggaccgtgaaagtcaattggac 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 gatatgccgccttcagcaaaaagggattctgtctttgtggaccgtgaaagtcaattggac 972
Query: 864 tctttacttccttcctccactatgtctctctatggccaagatgcttcacattctaatatt 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 tctttacttccttcctccactatgtctctctatggccaagatgcttcacattctaatatt 1032
Query: 924 cgttcttcagctcttagtcgtgttggtgctcccattgttactacggtaa 972
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 cgttcttcagctcttagtcgtgttggtgctcccattgttactacggtaa 1081
Score = 147 bits (74), Expect = 1e-34
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 atggccaccgccgaacctaccccgaacggcacccccgccaccgccaccgcctcgaatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 atggccaccgccgaacctaccccgaacggcacccccgccaccgccaccgcctcgaatcca 114
Query: 61 cttccatctgacaa 74
||||||||||||||
Sbjct: 115 cttccatctgacaa 128
>gnl|LJGI|TC72222 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 958
Score = 226 bits (114), Expect = 2e-58
Identities = 414/514 (80%), Gaps = 15/514 (2%)
Strand = Plus / Plus
Query: 222 caaggtgggcagcatcatcggccgcaagggagagctcatcaagaagatctgcgaagagac 281
|||||| |||||||||||||||||||| || || ||||||||||||| |||||||||||
Sbjct: 134 caaggtcggcagcatcatcggccgcaaaggcgaactcatcaagaagacttgcgaagagac 193
Query: 282 tcgagctcgcgttcgcgtcctcgaggcttccgttggcacgcctgatcgaatcgtactcat 341
|||||||||| ||||||| ||||| ||| || |||| || ||||||||||||||||| |
Sbjct: 194 tcgagctcgcattcgcgttctcgatgctccccttggtactcctgatcgaatcgtacttgt 253
Query: 342 atcagggaaggaagagctagatgcagctctttcgcctgcaatggatgcggttataagggt 401
||||||||| ||||||| ||| ||| ||||||| ||||||||||| ||||| |||||| |
Sbjct: 254 atcagggaaagaagagccagaggcacctctttctcctgcaatggacgcggtgataaggat 313
Query: 402 attcaagcgcgtctctgggctatcggaagctgatggtgagattaaagggtctgctgctgc 461
||| || |||||||| || || | | ||| ||| ||| | ||| |||
Sbjct: 314 atttaaacgcgtctcggg---attg---------gctgaaattgaag---cagctcctgg 358
Query: 462 tgctacattctgttctatccgtttattgacggcggcaacacaggctatcaatttgatagg 521
|||||||| ||||| ||||||||||| |||| | || ||||||||||||||||| ||
Sbjct: 359 ggctacattttgttccgtccgtttattggtggcgtcgactcaggctatcaatttgattgg 418
Query: 522 aaagcaaggttcaacaattagagccatacatgagaataccggcgcttctattaaagtact 581
|||||| || || |||| | ||||||| |||| |||||| ||| || ||| |||| |
Sbjct: 419 aaagcagggctctttgattaaatccatacaggagagtaccggtgctgctgttagagtatt 478
Query: 582 gtcaggagatgaggtgcaatcttttgctactgcggatgagaggatcatagaattgcaggg 641
| | ||||||||| | | ||| | |||| |||| ||||||||||| | ||| |||||||
Sbjct: 479 gactggagatgagcttccatcctatgctgctgctgatgagaggattgtggaagtgcaggg 538
Query: 642 agaagccttgaaggtccttaatgcgctggaagctgtggttggccatctgaggaaattttt 701
||| |||||||||||||||| || |||||||| || ||||| || ||||||| |||||
Sbjct: 539 ggaacccttgaaggtccttaaagctctggaagcagtagttggacacttgaggaagttttt 598
Query: 702 ggttgaccacagtgttcttcccttatttgagaaa 735
|||||| || | |||||||||| |||||||||||
Sbjct: 599 ggttgatcatactgttcttcccctatttgagaaa 632