Miyakogusa Predicted Gene
- Lj6g3v1329830.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1329830.1 tr|B6VJ14|B6VJ14_BROIN Ribosomal protein S1A
(Fragment) OS=Bromus inermis GN=rps1A PE=4 SV=1,68.92,1e-18,S1
RNA-BINDING DOMAIN-CONTAINING PROTEIN,NULL,CUFF.59372.1
(619 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57448 similar to UniRef100_A8IFK3 Cluster: S1 ribosom... 1227 0.0
gnl|LJGI|TC74892 similar to UniRef100_A8IFK3 Cluster: S1 ribosom... 620 e-177
>gnl|LJGI|TC57448 similar to UniRef100_A8IFK3 Cluster: S1 ribosomal protein; n=1;
Pisum sativum|Rep: S1 ribosomal protein - Pisum sativum
(Garden pea), complete
Length = 927
Score = 1227 bits (619), Expect = 0.0
Identities = 619/619 (100%)
Strand = Plus / Plus
Query: 1 atgagcagctatttgagtcgatcattttcaagatgcaattcaagtttattcttatgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atgagcagctatttgagtcgatcattttcaagatgcaattcaagtttattcttatgtagt 191
Query: 61 ggaaaggccttacaatctgaagttttacgcttgggaaaagatacattcttggtggatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggaaaggccttacaatctgaagttttacgcttgggaaaagatacattcttggtggatgca 251
Query: 121 ggacctgggtccgccagaatttgtatgcaagatgagcctattggagtgccaattaaccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggacctgggtccgccagaatttgtatgcaagatgagcctattggagtgccaattaaccga 311
Query: 181 gccaccaccaggtttgagaataaggtgggattcgtgggtcaaggggccggtgaatcactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gccaccaccaggtttgagaataaggtgggattcgtgggtcaaggggccggtgaatcactg 371
Query: 241 atcaaaaagaagattttggagagattcttcatcgacctagtggccggcgaatcacttatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atcaaaaagaagattttggagagattcttcatcgacctagtggccggcgaatcacttatg 431
Query: 301 aaagatcgagcaactgcaaggttcaatgaattggtgggatccacagatggagtgcctggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaagatcgagcaactgcaaggttcaatgaattggtgggatccacagatggagtgcctggt 491
Query: 361 gaaccgcttctccttcttccgcgaaggttcaggcaaaaccgagcttggttggaactgaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaaccgcttctccttcttccgcgaaggttcaggcaaaaccgagcttggttggaactgaac 551
Query: 421 aaggtttggcgaacgaatacaaaggtgaagggctttatgattgacaaagtcagaggaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaggtttggcgaacgaatacaaaggtgaagggctttatgattgacaaagtcagaggaggt 611
Query: 481 tattcagtagccattgcaggtttccttacttttcttccattcggttcttacctgagaagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tattcagtagccattgcaggtttccttacttttcttccattcggttcttacctgagaagg 671
Query: 541 aagaaaatgaggatatcgaatgatcgattcaccattgagactattaaccccaaaaggtca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aagaaaatgaggatatcgaatgatcgattcaccattgagactattaaccccaaaaggtca 731
Query: 601 aatattgtggtgttctaac 619
|||||||||||||||||||
Sbjct: 732 aatattgtggtgttctaac 750
>gnl|LJGI|TC74892 similar to UniRef100_A8IFK3 Cluster: S1 ribosomal protein; n=1;
Pisum sativum|Rep: S1 ribosomal protein - Pisum sativum
(Garden pea), partial (44%)
Length = 736
Score = 620 bits (313), Expect = e-177
Identities = 372/387 (96%), Gaps = 5/387 (1%)
Strand = Plus / Plus
Query: 236 cactgatc-aaaaagaagatttt-ggagagattcttcatcgacct-agtggccggcgaat 292
|||||||| |||||| ||||||| ||||||||| || || ||||| ||||||||| ||||
Sbjct: 92 cactgatcnaaaaagnagatttttggagagatttttnattgaccttagtggccggggaat 151
Query: 293 cacttatgaaagatcgagcaactgcaaggttcaatgaattggtgggatccacagatggag 352
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cacttatgaa-gatngagcaactgcaaggttcaatgaattggtgggatccacagatggag 210
Query: 353 tgcctggtgaaccgcttctccttcttccgcgaaggttcaggcaaaaccgagcttggttgg 412
|||||||||||||| || || || ||||| ||||||||||||||||||||||||||||||
Sbjct: 211 tgcctggtgaaccg-ttntcnttnttccgggaaggttcaggcaaaaccgagcttggttgg 269
Query: 413 aactgaacaaggtttggcgaacgaatacaaaggtgaagggctttatgattgacaaagtca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aactgaacaaggtttggcgaacgaatacaaaggtgaagggctttatgattgacaaagtca 329
Query: 473 gaggaggttattcagtagccattgcaggtttccttacttttcttccattcggttcttacc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gaggaggttattcagtagccattgcaggtttccttacttttcttccattcggttcttacc 389
Query: 533 tgagaaggaagaaaatgaggatatcgaatgatcgattcaccattgagactattaacccca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgagaaggaagaaaatgaggatatcgaatgatcgattcaccattgagactattaacccca 449
Query: 593 aaaggtcaaatattgtggtgttctaac 619
|||||||||||||||||||||||||||
Sbjct: 450 aaaggtcaaatattgtggtgttctaac 476