Miyakogusa Predicted Gene

Lj6g3v1300850.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1300850.1 Non Chatacterized Hit- tr|A3AFR6|A3AFR6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,64.29,0.000000000002,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; Homeobox,Homeodomain; HALZ,Leucine zipper,
homeobox,CUFF.59310.1
         (699 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71361 homologue to UniRef100_Q39862 Cluster: Homeobox...    74   1e-12
gnl|LJGI|BW598498 homologue to UniRef100_Q45RR3 Cluster: Type II...    54   1e-06
gnl|LJGI|TC74320 homologue to UniRef100_A7R6H2 Cluster: Chromoso...    52   5e-06
gnl|LJGI|TC64231 homologue to UniRef100_A7R6H2 Cluster: Chromoso...    52   5e-06

>gnl|LJGI|TC71361 homologue to UniRef100_Q39862 Cluster: Homeobox-leucine zipper
           protein; n=1; Glycine max|Rep: Homeobox-leucine zipper
           protein - Glycine max (Soybean), partial (33%)
          Length = 706

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 382 gaggtttggttccagaacagaagagcaaggaccaagctgaaacaaaccgaggt 434
           ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 94  gaggtgtggttccagaacagaagagcaaggactaagctgaagcaaacggaggt 146


>gnl|LJGI|BW598498 homologue to UniRef100_Q45RR3 Cluster: Type II homeodomain-leucine
           zipper protein; n=1; Medicago sativa|Rep: Type II
           homeodomain-leucine zipper protein - Medicago sativa
           (Alfalfa), partial (26%)
          Length = 487

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 388 tggttccagaacagaagagcaaggaccaagctgaa 422
           |||||||| ||||||||||||||||| ||||||||
Sbjct: 30  tggttccaaaacagaagagcaaggactaagctgaa 64


>gnl|LJGI|TC74320 homologue to UniRef100_A7R6H2 Cluster: Chromosome undetermined
           scaffold_1278, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_1278,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (57%)
          Length = 1259

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 382 gaggtttggttccagaacagaagagcaaggaccaagctgaaacaaaccgaggtgaattgc 441
           ||||| |||||||||||  | ||||| || || |||||||| |||||||||||| |||||
Sbjct: 683 gaggtgtggttccagaatcgtagagccagaacaaagctgaagcaaaccgaggtggattgc 742

             
Query: 442 ga 443
           ||
Sbjct: 743 ga 744


>gnl|LJGI|TC64231 homologue to UniRef100_A7R6H2 Cluster: Chromosome undetermined
           scaffold_1278, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_1278,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (48%)
          Length = 801

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 382 gaggtttggttccagaacagaagagcaaggaccaagctgaaacaaaccgaggtgaattgc 441
           ||||| |||||||||||  | ||||| || || |||||||| |||||||||||| |||||
Sbjct: 487 gaggtgtggttccagaatcgtagagccagaacaaagctgaagcaaaccgaggtggattgc 546

             
Query: 442 ga 443
           ||
Sbjct: 547 ga 548