Miyakogusa Predicted Gene
- Lj6g3v1249670.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1249670.1 tr|G7JDQ2|G7JDQ2_MEDTR CCP-like protein
OS=Medicago truncatula GN=MTR_4g066770 PE=4
SV=1,37.68,5e-19,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain,CUFF.59293.1
(574 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 359 1e-98
gnl|LJGI|AV765936 weakly similar to UniRef100_Q2HWB4 Cluster: Cy... 256 1e-67
gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease ... 70 2e-11
gnl|LJGI|BP051420 68 7e-11
gnl|LJGI|TC82429 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 68 7e-11
gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 66 3e-10
gnl|LJGI|TC68257 64 1e-09
>gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box protein
interaction domain; n=1; Medicago truncatula|Rep:
Cyclin-like F-box; F-box protein interaction domain -
Medicago truncatula (Barrel medic), partial (9%)
Length = 1418
Score = 359 bits (181), Expect = 1e-98
Identities = 359/417 (86%), Gaps = 6/417 (1%)
Strand = Plus / Plus
Query: 161 ttattatttctcaggatttggggaaggagtgttatcaagaacttttgctgcctggtgatt 220
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct: 881 ttattatttctcaggatttgaggaaggagtgttatcaaaaacttttgctgcctgatgatt 940
Query: 221 atgaa---gatgatggtgggaaacaggctatgaatttgcaggtgttgaaggattgcttgt 277
||| | ||||||||||| ||| | || |||||||||||||||||| |||||||||||
Sbjct: 941 atggacatgatgatggtggaaaagggcctttgaatttgcaggtgttgagggattgcttgt 1000
Query: 278 gcgtgtacatcctttctccccgtcgcaggatttgtgatatttggcttatgatggagtatg 337
|| ||| | ||| |||| | | | ||| ||||||||||||| |||||| ||||||||
Sbjct: 1001 gcttgtgcgtccattctttcgattccgggagttgtgatatttggtttatgaaggagtatg 1060
Query: 338 gaaggaaagagtcttggactaaattattcactgttcctgacccgaatatatgtttctcgg 397
|||| ||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct: 1061 gaagtaaagagtcttggactaaattattcatcgttcctaacccggatggatgtttctcgt 1120
Query: 398 gcaccaaaatacttcatatttccaaggaagatgaagggctggtggttaaagaacatggaa 457
||||||| |||||||||| ||||||||||||| ||||||| ||||| | || ||
Sbjct: 1121 tcaccaaaccttttcatatttctaaggaagatgaagtgctggtgattaaa---cttgaaa 1177
Query: 458 tcttatatctttacaattttagagacaacacttttaaaattctcccaattcgaaacatcg 517
|| ||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||
Sbjct: 1178 tcatatatctttacaattctagagacaacactttcaaaatttacccaattcaaaacatcg 1237
Query: 518 aagattggacggtcccggtggtctatgtagaaagtttgatatcaccttgtttttgat 574
||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 1238 aagattggatgatcccagtggtctatgtagaaagtttgatatcgccttgtttttgat 1294
Score = 58.0 bits (29), Expect = 6e-08
Identities = 73/87 (83%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 14 ttcatactttgggtacaaattgttggaggatgattcaagacttcccttctttttgtgtcc 73
|||||||||| |||||| |||||||||||| ||||||||| |||||| | | |||
Sbjct: 722 ttcatactttaggtacacattgttggaggaggattcaagagctcccttgtgtccctgt-- 779
Query: 74 ctcaatcagcagtatttgtgagtggca 100
|||||||||| |||||||||||||||
Sbjct: 780 -tcaatcagcaatatttgtgagtggca 805
>gnl|LJGI|AV765936 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (5%)
Length = 447
Score = 256 bits (129), Expect = 1e-67
Identities = 230/263 (87%), Gaps = 3/263 (1%)
Strand = Plus / Minus
Query: 309 ttgtgatatttggcttatgatggagtatggaaggaaagagtcttggactaaattattcac 368
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 417 ttgtgatatttggcttatgaaggagtatggaagtaaagagtcttggactaaattattcac 358
Query: 369 tgttcctgacccgaatatatgtttctcgggcaccaaaatacttcatatttccaaggaaga 428
|||||| | ||| | | |||||||| ||||||| | ||||||| || ||||||||
Sbjct: 357 cgttcctaatccggacggaagtttctcgttcaccaaaccatttcatatctctaaggaaga 298
Query: 429 tgaagggctggtggttaaagaacatggaatcttatatctttacaattttagagacaacac 488
||||| |||||||||||| || ||||||| ||||||||||||||| ||||||||||||
Sbjct: 297 tgaagtgctggtggttaatga---tggaatcgtatatctttacaattctagagacaacac 241
Query: 489 ttttaaaattctcccaattcgaaacatcgaagattggacggtcccggtggtctatgtaga 548
||| |||||| ||||||||| ||| ||| | ||||||| ||||| ||||||||||||||
Sbjct: 240 tttcaaaattttcccaattcaaaatatcaatgattggattgtcccagtggtctatgtaga 181
Query: 549 aagtttgatatcaccttgttttt 571
|||||||||||||||||||||||
Sbjct: 180 aagtttgatatcaccttgttttt 158
Score = 79.8 bits (40), Expect = 2e-14
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 535 gtggtctatgtagaaagtttgatatcaccttgtttttgat 574
||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gtggtctatgtagaaagtttgatatcaccttgtttttgat 70
>gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease of the
drug/metabolite transporter (DMT) superfamily; n=1;
Synechococcus sp. WH 7803|Rep: Permease of the
drug/metabolite transporter (DMT) superfamily -
Synechococcus sp. (strain WH7803), partial (7%)
Length = 738
Score = 69.9 bits (35), Expect = 2e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 155 gttgggttattatttctcaggatttggggaaggagtgttatcaagaacttt 205
||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 290 gttgggttattgtttctcttgatttggggaaggaatgttatcaagaacttt 340
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 312 tgatatttggcttatgatggagtatggaaggaaagagtcttggactaaattattcactgt 371
|||| |||||||||||| ||||||||||| |||||||| ||||| ||| | |||| |||
Sbjct: 426 tgatgtttggcttatgaaggagtatggaaataaagagtcctggaccaaaattttcagtgt 485
Query: 372 tcct 375
||||
Sbjct: 486 tcct 489
>gnl|LJGI|BP051420
Length = 530
Score = 67.9 bits (34), Expect = 7e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 537 ggtctatgtagaaagtttgatatcaccttgtttttgat 574
|||||||||||||||||||||||||||||| |||||||
Sbjct: 452 ggtctatgtagaaagtttgatatcaccttgcttttgat 415
>gnl|LJGI|TC82429 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (5%)
Length = 542
Score = 67.9 bits (34), Expect = 7e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 310 tgtgatatttggcttatgatggagtatggaaggaaagagtcttggactaaattattca 367
|||||| |||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct: 46 tgtgatgtttggcttatgaaggagtatggaaatcaacagtcttggactaaattattca 103
Score = 52.0 bits (26), Expect = 4e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 528 ggtcccggtggtctatgtagaaagtttgatatcacctt 565
|||||| | ||||||||| |||||||||||||||||||
Sbjct: 261 ggtcccaggggtctatgttgaaagtttgatatcacctt 298
>gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (12%)
Length = 786
Score = 65.9 bits (33), Expect = 3e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 10 aaggttcatactttgggtacaaattgttggaggatgattcaagacttcc 58
||||||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct: 666 aaggttcatacattgggtactcattgttggaggaagattcaagacttcc 714
>gnl|LJGI|TC68257
Length = 601
Score = 63.9 bits (32), Expect = 1e-09
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 537 ggtctatgtagaaagtttgatatcaccttgtt 568
||||||||||||||||||||||||||||||||
Sbjct: 138 ggtctatgtagaaagtttgatatcaccttgtt 107
Score = 63.9 bits (32), Expect = 1e-09
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 311 gtgatatttggcttatgatggagtatggaaggaaagagtcttggactaaatt 362
|||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct: 364 gtgatatttggcttatgaaggagtatggaaataaagattcatggactaaatt 313