Miyakogusa Predicted Gene
- Lj6g3v1239580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1239580.1 Non Chatacterized Hit- tr|K3XHX2|K3XHX2_SETIT
Uncharacterized protein OS=Setaria italica GN=Si001494,31.77,4e-18,no
description,Helix-loop-helix domain; HLH,Helix-loop-helix domain;
helix loop helix domain,Helix-l,CUFF.59285.1
(1197 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS358131 weakly similar to UniRef100_A7PE63 Cluster: Ch... 1023 0.0
gnl|LJGI|FS331899 similar to UniRef100_A2Q1C5 Cluster: Helix-loo... 478 e-134
>gnl|LJGI|FS358131 weakly similar to UniRef100_A7PE63 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (31%)
Length = 739
Score = 1023 bits (516), Expect = 0.0
Identities = 535/544 (98%)
Strand = Plus / Minus
Query: 654 agagagaagaaggcgtgagaagctgaatgagaattttcaagcactcagagcactgcttcc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agagagaagaaggcgtgagaagctgaatgagaattttcaagcactcagagcactgcttcc 680
Query: 714 tccaggaactaagaaagacaaagcttccattctgataacagcaaaggagacattgagctc 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tccaggaactaagaaagacaaagcttccattctgataacagcaaaggagacattgagctc 620
Query: 774 tttgttagctgaaattgacaagcaagccnnnnnnnntcaggagctgacgtcactatttcc 833
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 tttgttagctgaaattgacaagcaagccaaaagaaatcaggagctgacgtcactatttcc 560
Query: 834 agccaaagaatctacaacggaaggaaccaaagccaccctatcatcatcatcaaatgaaag 893
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agccaaagaatctacaactgaaggaaccaaagccaccctatcatcatcatcaaatgaaag 500
Query: 894 attcagtgtccaagtttcaaatgtactagaatcaagctcatctgaagagagaacggtgga 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attcagtgtccaagtttcaaatgtactagaatcaagctcatctgaagagagaacggtgga 440
Query: 954 cttgcaagtgaatttgagaggacaaatttctcaagctgatgtgttgattcgattattgga 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttgcaagtgaatttgagaggacaaatttctcaagctgatgtgttgattcgattattgga 380
Query: 1014 attcttaaaacaggttcaccatgtgagcttgatttccatgagcacaaatgcagaagggaa 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attcttaaaacaggttcaccatgtgagcttgatttccatgagcacaaatgcagaagggaa 320
Query: 1074 tgccattcatcaactaaccttcaggctaaggattattcagggaagtgaatgggacgagct 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgccattcatcaactaaccttcaggctaaggattattcagggaagtgaatgggacgagct 260
Query: 1134 tgccttccaggaagcagtgagaagagtggttgctgacttggcacagtgccaagtggacca 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgccttccaggaagcagtgagaagagtggttgctgacttggcacagtgccaagtggacca 200
Query: 1194 atag 1197
||||
Sbjct: 199 atag 196
>gnl|LJGI|FS331899 similar to UniRef100_A2Q1C5 Cluster: Helix-loop-helix DNA-binding;
n=1; Medicago truncatula|Rep: Helix-loop-helix
DNA-binding - Medicago truncatula (Barrel medic),
partial (42%)
Length = 645
Score = 478 bits (241), Expect = e-134
Identities = 241/241 (100%)
Strand = Plus / Plus
Query: 1 atggggtgcaacaaaggggaaattgagcttggtttcttaaacatgtctcaagcagacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atggggtgcaacaaaggggaaattgagcttggtttcttaaacatgtctcaagcagacctt 464
Query: 61 caaacagcacttaggagtttgtttccagaagacttttctagacaaacccagcaaattgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 caaacagcacttaggagtttgtttccagaagacttttctagacaaacccagcaaattgat 524
Query: 121 cataataatccaccaacatcatcttcatcttctttaagatcaccatccacaggcagccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cataataatccaccaacatcatcttcatcttctttaagatcaccatccacaggcagccct 584
Query: 181 gaatactcatctctgttattcaacaatattccaggcacttcttctcaaccccattttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gaatactcatctctgttattcaacaatattccaggcacttcttctcaaccccattttcct 644
Query: 241 g 241
|
Sbjct: 645 g 645