Miyakogusa Predicted Gene
- Lj6g3v1239570.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1239570.1 Non Chatacterized Hit- tr|C6TG27|C6TG27_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2 S,83.61,0,RNA
recognition motif,RNA recognition motif domain; RRM_1,RNA recognition
motif domain; PUTATIVE UNC,CUFF.59284.1
(471 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59104 similar to UniRef100_Q2VCH8 Cluster: RNA bindin... 916 0.0
gnl|LJGI|TC57778 similar to UniRef100_Q2VCH8 Cluster: RNA bindin... 583 e-166
>gnl|LJGI|TC59104 similar to UniRef100_Q2VCH8 Cluster: RNA binding protein-like
protein; n=1; Solanum tuberosum|Rep: RNA binding
protein-like protein - Solanum tuberosum (Potato),
partial (82%)
Length = 948
Score = 916 bits (462), Expect = 0.0
Identities = 471/473 (99%), Gaps = 2/473 (0%)
Strand = Plus / Plus
Query: 1 atggccaagaaggcgaacaaagcgatgaacaagagtttgaaaagggtcactgctattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atggccaagaaggcgaacaaagcgatgaacaagagtttgaaaagggtcactgctattaat 186
Query: 61 aaaccatctgagggtcctgattttttgcctttggaaggtggtcctgctcgtaaacttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aaaccatctgagggtcctgattttttgcctttggaaggtggtcctgctcgtaaacttcct 246
Query: 121 gaacagaaaccgttggagaataagggcagggtcttgtatgttggtcggattccgcatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaacagaaaccgttggagaataagggcagggtcttgtatgttggtcggattccgcatggg 306
Query: 181 ttctatgagaaggagattgaaggttattttggacaatttggaaccatcaagagattgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttctatgagaaggagattgaaggttattttggacaatttggaaccatcaagagattgaga 366
Query: 241 attgccagaaacaaaacgactggaaaatcaagacattttgggttcatagaattcgaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 attgccagaaacaaaacgactggaaaatcaagacattttgggttcatagaattcgaatct 426
Query: 301 cctgaggtagcaaaaattgtagctgatactatgcacaattatctactatttgaacacct- 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cctgaggtagcaaaaattgtagctgatactatgcacaattatctactatttgaacacctt 486
Query: 360 -tccaggttcatgtgatacctccagagcatgttcattcaatgttatggagaggattcaat 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctccaggttcatgtgatacctccagagcatgttcattcaatgttatggagaggattcaat 546
Query: 419 taccgttacaagccattggactcggtccaaatgcagcgggagcgacatgacaa 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taccgttacaagccattggactcggtccaaatgcagcgggagcgacatgacaa 599
>gnl|LJGI|TC57778 similar to UniRef100_Q2VCH8 Cluster: RNA binding protein-like
protein; n=1; Solanum tuberosum|Rep: RNA binding
protein-like protein - Solanum tuberosum (Potato),
partial (82%)
Length = 1101
Score = 583 bits (294), Expect = e-166
Identities = 425/467 (91%), Gaps = 5/467 (1%)
Strand = Plus / Plus
Query: 7 aagaaggcgaacaaagcgatgaacaagagtttgaaaagggtcactgctattaataaacca 66
|||||||| || ||||||||| | ||||||||||||||||||||||| | ||||||
Sbjct: 92 aagaaggcaaagaaagcgatgcagaagagtttgaaaagggtcactgc---tgctaaaccc 148
Query: 67 tctgagggtcctgattttttgcctttggaaggtggtcctgctcgtaaacttcctgaacag 126
||||| ||||||||||||||||| |||||||||||||||||||| |||||||| | |||
Sbjct: 149 tctgatggtcctgattttttgcccttggaaggtggtcctgctcggaaacttcccgtgcag 208
Query: 127 aaaccgttggagaataagggcagggtcttgtatgttggtcggattccgcatgggttctat 186
| ||||||||||||||| |||| ||||||||||| |||||||| || ||||||||||||
Sbjct: 209 acaccgttggagaataaaggcaccgtcttgtatgtcggtcggatcccacatgggttctat 268
Query: 187 gagaaggagattgaaggttattttggacaatttggaaccatcaagagattgagaattgcc 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 269 gagaaggagattgaaggttattttggacaatttggaaccatcaagaggttgagaattgcc 328
Query: 247 agaaacaaaacgactggaaaatcaagacattttgggttcatagaattcgaatctcctgag 306
|||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 329 agaaacaaaaagactggaaaatcaagacattttgggttcatagaatttgaatctgctgag 388
Query: 307 gtagcaaaaattgtagctgatactatgcacaattatctactatttgaacacct--tccag 364
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 389 gtagcaaaaattgtagctgatactatgcacaattatctactatttgcgcaccttctccag 448
Query: 365 gttcatgtgatacctccagagcatgttcattcaatgttatggagaggattcaattaccgt 424
||||||||||| ||||||||||| |||||| ||| ||||||||||| ||||||||||||
Sbjct: 449 gttcatgtgatgcctccagagcaggttcatccaaacttatggagagggttcaattaccgt 508
Query: 425 tacaagccattggactcggtccaaatgcagcgggagcgacatgacaa 471
||||||||||||||||| ||| |||| ||||| |||| |||||||||
Sbjct: 509 tacaagccattggactctgtcgaaattcagcgagagcaacatgacaa 555