Miyakogusa Predicted Gene

Lj6g3v1229370.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1229370.1 tr|G9ZZ95|G9ZZ95_9PROT Type I secretion target
GGXGXDXXX repeat-containing domain protein OS=Acetoba,41.86,8.8,
,CUFF.59275.1
         (193 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO016325 similar to UniRef100_A7PPK0 Cluster: Chromosom...    62   1e-09
gnl|LJGI|TC65323                                                       54   3e-07

>gnl|LJGI|GO016325 similar to UniRef100_A7PPK0 Cluster: Chromosome chr8 scaffold_23,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_23, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (7%)
          Length = 910

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 44/47 (93%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                          
Query: 69  tgatgaatggtacgacggagtgggtagaaaggggagaggaaacacgt 115
           ||||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 562 tgatgaatggtacgatggagtgggtag-aaggggagagcaaacacgt 607


>gnl|LJGI|TC65323 
          Length = 929

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 55/63 (87%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                       
Query: 84  cggagtgggtagaaaggggagaggaaacacgttaagccagctagggttgatgggagatgg 143
           |||||||||||||||| ||    || |||||||||||||||| |||||||| ||||||||
Sbjct: 109 cggagtgggtagaaagcgggtctgagacacgttaagccagct-gggttgattggagatgg 51

              
Query: 144 gga 146
           |||
Sbjct: 50  gga 48