Miyakogusa Predicted Gene

Lj6g3v1174050.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1174050.1 Non Chatacterized Hit- tr|I1MHI6|I1MHI6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95.05,0,B3 DNA
binding domain,B3 DNA binding domain; B3,B3 DNA binding domain;
Auxin_resp,Auxin response fac,CUFF.59188.1
         (912 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV409033 homologue to UniRef100_Q6L8U3 Cluster: Auxin r...   565   e-160
gnl|LJGI|BP056523 similar to UniRef100_A7PDS6 Cluster: Chromosom...   147   1e-34
gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromos...    98   1e-19
gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcript...    80   3e-14
gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromos...    66   4e-10
gnl|LJGI|TC60440 similar to UniRef100_A2Q532 Cluster: Transcript...    58   1e-07

>gnl|LJGI|AV409033 homologue to UniRef100_Q6L8U3 Cluster: Auxin response factor 1;
           n=1; Cucumis sativus|Rep: Auxin response factor 1 -
           Cucumis sativus (Cucumber), partial (13%)
          Length = 418

 Score =  565 bits (285), Expect = e-160
 Identities = 381/413 (92%)
 Strand = Plus / Plus

                                                                       
Query: 22  tacttgcctaattctggtgaaggagaaaggaagagcatcaattcagagttatggcatgct 81
           |||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct: 6   tacttgccaaattctggtgaaggggaaaggaagaccatcaattcagaattatggcatgct 65

                                                                       
Query: 82  tgtgctggaccattggtttctttacctccggttggaagtcttgtggtttacttccctcaa 141
           ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 66  tgtgctggacctttggtttctttgcctcctgttggaagtcttgtggtttacttcccgcaa 125

                                                                       
Query: 142 ggacatagtgagcaagttgcagcttccatgcaaaaggaggctgattttatacccagttac 201
           ||||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 126 ggacacagtgagcaagttgcagcttccatgcaaaaggagactgacttcatacccagttac 185

                                                                       
Query: 202 cctaaccttccctccaagttgatttgcatgcttcacaatgttgccttgcatgctgatcct 261
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 186 cctaaccttccctccaagttgatttgcatgcttcacaatgttgcgctgcatgctgatcct 245

                                                                       
Query: 262 gaaactgacgaggtctatgcacagatgacccttcaaccagtaaataaatatgacaaggaa 321
           ||||||||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||| 
Sbjct: 246 gaaactgacgaagtctatgcacaaatgacccttcagcctgtaaacaaatatgataaggat 305

                                                                       
Query: 322 gcaatgttggcatcagacatggggctcaaacaaaacaaccaacctactgaattcttttgc 381
           |||||  |||||||||||||||| ||||||||||||   |||||||| || |||||||||
Sbjct: 306 gcaatactggcatcagacatgggtctcaaacaaaaccgacaacctacagagttcttttgc 365

                                                                
Query: 382 aaaactcttacagctagtgacactagcactcatggtggattctctgtgcctcg 434
           |||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 366 aaaactcttacagctagtgatacaagcactcatggtggattttctgtgcctcg 418


>gnl|LJGI|BP056523 similar to UniRef100_A7PDS6 Cluster: Chromosome chr11 scaffold_13
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:,
           partial (2%)
          Length = 546

 Score =  147 bits (74), Expect = 1e-34
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaggctcctcccaatggctacttgcctaattctggtgaaggagaaaggaagagcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atgaaggctcctcccaatggctacttgcctaattctggtgaaggagaaaggaagagcatc 532

                         
Query: 61  aattcagagttatg 74
           ||||||||||||||
Sbjct: 533 aattcagagttatg 546


>gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromosome chr12
           scaffold_18, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (22%)
          Length = 545

 Score = 97.6 bits (49), Expect = 1e-19
 Identities = 106/125 (84%)
 Strand = Plus / Plus

                                                                       
Query: 721 agtgacagcatgcatattggcattcttgctgctgcagctcatgctgcttcaaataacagc 780
           ||||| |||||||| |||||| |||||||||||||||||||||| ||||| |  || || 
Sbjct: 410 agtgatagcatgcacattggccttcttgctgctgcagctcatgcagcttccacaaatagt 469

                                                                       
Query: 781 ccttttactatattttataatccaaggaccagcccctctgaatttgtaattccattggcc 840
           |  ||||| ||||| |||||||| ||| | ||||| ||||||||||||||||| ||||||
Sbjct: 470 cgctttaccatattctataatcctagggcaagcccatctgaatttgtaattcctttggcc 529

                
Query: 841 aagta 845
            ||||
Sbjct: 530 cagta 534



 Score = 52.0 bits (26), Expect = 6e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 397 agtgacactagcactcatggtggattctctgtgcctcgtagagcagctga 446
           ||||| || ||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 86  agtgataccagcactcatggaggattttctgttcctcgaagagcagctga 135


>gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3; Auxin
            response factor; n=1; Medicago truncatula|Rep:
            Transcriptional factor B3; Auxin response factor -
            Medicago truncatula (Barrel medic), partial (37%)
          Length = 1325

 Score = 79.8 bits (40), Expect = 3e-14
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                        
Query: 379  tgcaaaactcttacagctagtgacactagcactcatggtggattctctgtgcctcgtaga 438
            ||||| ||||| ||||||   |||||||||||||||||||||||||||||||||||| ||
Sbjct: 1020 tgcaagactctgacagcttcagacactagcactcatggtggattctctgtgcctcgtcga 1079

                    
Query: 439  gcagctga 446
            || |||||
Sbjct: 1080 gctgctga 1087


>gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromosome chr10
           scaffold_43, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr10 scaffold_43, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (17%)
          Length = 435

 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 394 gctagtgacactagcactcatggtggattctctgtgcctcg 434
           ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 306 gctagtgacacaagcactcatgggggattctctgtgcctcg 346


>gnl|LJGI|TC60440 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3;
           Auxin response factor; n=1; Medicago truncatula|Rep:
           Transcriptional factor B3; Auxin response factor -
           Medicago truncatula (Barrel medic), partial (21%)
          Length = 766

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 403 actagcactcatggtggattctctgtgcctcgt 435
           ||||| |||||||||||||||||||||||||||
Sbjct: 732 actagtactcatggtggattctctgtgcctcgt 764