Miyakogusa Predicted Gene
- Lj6g3v1150710.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1150710.1 Non Chatacterized Hit- tr|J3MXH8|J3MXH8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB09G1,33.54,0.000000000000002,OS11G0103400 PROTEIN,NULL; ARIADNE
RING ZINC FINGER,NULL; Ring finger,Zinc finger, RING-type; In
Bet,CUFF.59150.1
(999 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS329711 weakly similar to UniRef100_A7PDQ1 Cluster: Ch... 999 0.0
gnl|LJGI|TC80130 similar to UniRef100_A7PDQ1 Cluster: Chromosome... 214 8e-55
gnl|LJGI|TC72360 72 7e-12
gnl|LJGI|FS344597 similar to UniRef100_Q6ELF9 Cluster: Poly(A)-b... 52 7e-06
gnl|LJGI|TC62188 weakly similar to UniRef100_Q6ELF9 Cluster: Pol... 52 7e-06
>gnl|LJGI|FS329711 weakly similar to UniRef100_A7PDQ1 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (31%)
Length = 708
Score = 999 bits (504), Expect = 0.0
Identities = 548/569 (96%)
Strand = Plus / Plus
Query: 117 gactctgaatccccaaaccagaaccacaagaagaagaagaaccgttcttcccccttccat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gactctgaatccccaaaccagaaccacaagaagaagaagaaccgttcttcccccttccat 199
Query: 177 cgaaatcatcgacgtcgattccatctccttcacccgccgcacgccgcccaccaccaccgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cgaaatcatcgacgtcgattccatctccttcacccgccgcacgccgcccaccaccaccgt 259
Query: 237 catcgatctctccgacaccgaannnnnnnnnnnnnnnnnnntcagaatcctcaatttcat 296
|||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 catcgatctctccgacaccgaagacgacgacgacgacgacgtcagaatcctcaatttcat 319
Query: 297 ccccgcaaacacccctttcggcaaacgaatcaaaaaacgccacaccgagaaagccgaatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccccgcaaacacccctttcggcaaacgaatcaaaaaacgccacaccgagaaagccgaatc 379
Query: 357 atcaaatgacgcgccgttcacctgcgaaatctgcacggacaccaagacggtgagggactc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcaaatgacgcgccgttcacctgcgaaatctgcacggacaccaagacggtgagggactc 439
Query: 417 gttcgccatcagcggctgttcccacgcgtactgctccgattgcgtcgccacctacgtgcg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttcgccatcagcggctgttcccacgcgtactgctccgattgcgtcgccacctacgtgcg 499
Query: 477 gtccaagcttgaggagaacgtgatcaacatccggtgtcctgtttctggatgttcaggttt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtccaagcttgaggagaacgtgatcaacatccggtgtcctgtttctggatgttcaggttt 559
Query: 537 gcttgaggcggaggattgtcgcgcgattctctcgccggaggtttttgatcggtgggggac 596
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 gcttgaggcggaggattgtcgcgcgattctctcgccggaggtgtttgatcggtgggggac 619
Query: 597 ggcgacgtgcgaggcgttgtttgcggtgtctgagaaattctactgcccgttcaaggattg 656
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 ggcgacgtgcgaggcgttgtttgcggtgtcggagaaattctactgcccgttcaaggattg 679
Query: 657 ctctacgctgttgattgatgatggggcgg 685
|||||||||||||||||||||||||||||
Sbjct: 680 ctctacgctgttgattgatgatggggcgg 708
Score = 101 bits (51), Expect = 8e-21
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 1 atggaatatgaagcacccaccttctcccttttcactgaaccaccaccacct 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 atggaatatgaagcacccaccttctcccttttcactgaaccaccaccacct 74
>gnl|LJGI|TC80130 similar to UniRef100_A7PDQ1 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 662
Score = 214 bits (108), Expect = 8e-55
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 892 gaaggatgcatgtacatgaaatgcaggtgtggacatgccttctgttacaactgtggagct 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaggatgcatgtacatgaaatgcaggtgtggacatgccttctgttacaactgtggagct 60
Query: 952 cctaacaagaatcccagccatcactgcaacaagtgtcatcgctagcta 999
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctaacaagaatcccagccatcactgcaacaagtgtcatcgctagcta 108
>gnl|LJGI|TC72360
Length = 788
Score = 71.9 bits (36), Expect = 7e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 541 gaggcggaggattgtcgcgcgattctctcgccggaggtttttgatcggtgggggacggcg 600
|||||||||||||| |||||||||||| |||||||||| |||| |||||| |||||||
Sbjct: 706 gaggcggaggattgccgcgcgattctcccgccggaggtggttgaccggtggctgacggcg 765
Query: 601 acgtgcgaggcg 612
||||||||||
Sbjct: 766 ttgtgcgaggcg 777
Score = 52.0 bits (26), Expect = 7e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 368 cgccgttcacctgcgaaatctgcacggacaccaa 401
||||||||| |||||||||||||||||| |||||
Sbjct: 524 cgccgttcatctgcgaaatctgcacggaaaccaa 557
>gnl|LJGI|FS344597 similar to UniRef100_Q6ELF9 Cluster: Poly(A)-binding protein
C-terminal interacting protein 6; n=1; Cucumis
sativus|Rep: Poly(A)-binding protein C-terminal
interacting protein 6 - Cucumis sativus (Cucumber),
partial (36%)
Length = 674
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 132 aaccagaaccacaagaagaagaagaa 157
||||||||||||||||||||||||||
Sbjct: 341 aaccagaaccacaagaagaagaagaa 366
>gnl|LJGI|TC62188 weakly similar to UniRef100_Q6ELF9 Cluster: Poly(A)-binding protein
C-terminal interacting protein 6; n=1; Cucumis
sativus|Rep: Poly(A)-binding protein C-terminal
interacting protein 6 - Cucumis sativus (Cucumber),
partial (65%)
Length = 698
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 132 aaccagaaccacaagaagaagaagaa 157
||||||||||||||||||||||||||
Sbjct: 305 aaccagaaccacaagaagaagaagaa 330