Miyakogusa Predicted Gene

Lj6g3v1138490.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1138490.1 tr|B4DWF8|B4DWF8_HUMAN cDNA FLJ53414, highly
similar to Nuclear pore complex protein
Nup98-Nup96prec,34.48,3,seg,NULL,CUFF.59134.1
         (247 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74759 similar to UniRef100_A7P3K5 Cluster: Chromosome...   149   9e-36
gnl|LJGI|TC79614 homologue to UniRef100_P06928 Cluster: Protein ...   103   5e-22
gnl|LJGI|FS338735 weakly similar to UniRef100_A7P3K5 Cluster: Ch...    90   7e-18

>gnl|LJGI|TC74759 similar to UniRef100_A7P3K5 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (59%)
          Length = 1403

 Score =  149 bits (75), Expect = 9e-36
 Identities = 93/99 (93%)
 Strand = Plus / Plus

                                                                       
Query: 143 cgccctccacgtccttgagccgctccctccgttcaacgcccttgccgcctacgacctctg 202
           ||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 426 cgccctccacgccatggagccgctccctccgttcaacgccctcgccgcctacgacctccg 485

                                                  
Query: 203 ctcccgccgccgcctcttcctctcccacctcccctccga 241
           |||||||||||||||||||||| ||||||||||||||||
Sbjct: 486 ctcccgccgccgcctcttcctcacccacctcccctccga 524


>gnl|LJGI|TC79614 homologue to UniRef100_P06928 Cluster: Protein E5; n=3; Bovine
           papillomavirus - 1|Rep: Protein E5 - Bovine
           papillomavirus type 1, partial (32%)
          Length = 756

 Score =  103 bits (52), Expect = 5e-22
 Identities = 62/64 (96%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtattctccattgcccatcttcaatcacgtggttttggt-tcttaatttgagaattag 59
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 239 atgtattctccattgcccatcttcaatcacgtggttttggtcccttaatttgagaattag 298

               
Query: 60  ggtt 63
           ||||
Sbjct: 299 ggtt 302


>gnl|LJGI|FS338735 weakly similar to UniRef100_A7P3K5 Cluster: Chromosome chr1
           scaffold_5, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (40%)
          Length = 753

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                       
Query: 165 ctccctccgttcaacgcccttgccgcctacgacctctgctcccgccgccgcctcttcctc 224
           |||||||||||||||||||| ||||||||||||||| || |||||  |||||||||||||
Sbjct: 429 ctccctccgttcaacgccctcgccgcctacgacctccgcacccgcgaccgcctcttcctc 488

                            
Query: 225 tcccacctcccctccga 241
            |||  |||||||||||
Sbjct: 489 accccactcccctccga 505