Miyakogusa Predicted Gene
- Lj6g3v1126350.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1126350.2 Non Chatacterized Hit- tr|B4FEF9|B4FEF9_MAIZE
Uncharacterized protein OS=Zea mays PE=4 SV=1,76.92,9e-19,Helical
region found in SNAREs,Target SNARE coiled-coil domain; NOVEL PLANT
SNARE,NULL; VESICLE TRAN,CUFF.59126.2
(813 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61298 similar to UniRef100_A7NVY7 Cluster: Chromosome... 886 0.0
gnl|LJGI|TC65540 similar to UniRef100_A7NVY7 Cluster: Chromosome... 159 3e-38
gnl|LJGI|TC58796 weakly similar to UniRef100_O76689 Cluster: Sod... 159 3e-38
>gnl|LJGI|TC61298 similar to UniRef100_A7NVY7 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (97%)
Length = 1418
Score = 886 bits (447), Expect = 0.0
Identities = 714/803 (88%)
Strand = Plus / Plus
Query: 11 ccaacttgcagatgagccctcaggttgagcagatccacggcgaaattcgtgatcacttcc 70
||||||||||||||| ||||||| | || ||||||||||| |||||||| || ||||| |
Sbjct: 264 ccaacttgcagatgacccctcagctcgaacagatccacggtgaaattcgcgaccactttc 323
Query: 71 gcgccctcgcgaatggtttcccgaggttggataaaattaaagattccaatagacaaagta 130
| |||||||| ||||| || | || | ||||||| |||||||||||||| ||||||||||
Sbjct: 324 gagccctcgcaaatggctttcagaagctggataagattaaagattccaacagacaaagta 383
Query: 131 agcagctcgaagaactcgcagagaaaatgagggagtgccaaaggttgataaaagattttg 190
||||| |||||||| ||| ||| |||||||||||| |||||||||||||||| ||||
Sbjct: 384 ctcagctggaagaactaacagggaagatgagggagtgcaaaaggttgataaaagagtttg 443
Query: 191 atcgtgaaattaaagatgaagagggaagaaatcccccagaagtgagcaagcaactcaatg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcgtgaaattaaagatgaagagggaagaaatcccccagaagtgagcaagcaactcaatg 503
Query: 251 atgaaaagcaatcaatgatcagggaacataactcatatgtggcattgagaaaaacgtaca 310
| ||||||||||||||||||| ||| | || ||||| || ||||| |||||||||||||
Sbjct: 504 acgaaaagcaatcaatgatcaaggagctaaattcatacgtcgcattaagaaaaacgtaca 563
Query: 311 tgaataaccttggtaataagaaacttgaactttttgacatgggagctggagcaagtgagc 370
|||||| | |||||||||| ||||||||||| ||||||| ||||| ||||||||||| |
Sbjct: 564 tgaataccattggtaataaaaaacttgaactgtttgacaccggagcaggagcaagtgaac 623
Query: 371 ctatagctgaagataatgttcaattggcatcagaactctcaaatcaagaacttatcaatg 430
||| ||||||||| ||||| ||| ||||||||||| | ||||||||||||||| ||||||
Sbjct: 624 ctacagctgaagaaaatgtccaactggcatcagaaatgtcaaatcaagaacttgtcaatg 683
Query: 431 ctgggatgaagacaatggatgagactgatcaggctattgaaagatctaaccaggttgtac 490
|||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 684 ctgggatgaaaacaatggatgaaactgatcaggctattgagagatctaagcaggttgtac 743
Query: 491 atcaaacaattgaaatgggcacccaaactgctactaccttgaatggccaaactgaacaga 550
|||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 744 atcaaacagttgaagtgggcacccaaactgctggtaccttgaaaggccaaactgaacaaa 803
Query: 551 tgggccgtatcattaatgaacttgattcacttcagttttcgattaagaaggcctcccagc 610
|||||||||| |||| || |||||||| | ||||| || ||||||||||||||||| |
Sbjct: 804 tgggccgtattgttaacgagcttgattcgatccagttctcaattaagaaggcctcccaac 863
Query: 611 ttgtgaaggagattggtagaaaggtagctactgatacgtgcatcatgctttttctgttcc 670
| || ||||||||||||||| |||||||||| || | ||| |||||||||||||||||||
Sbjct: 864 tcgttaaggagattggtagacaggtagctacggacaagtgtatcatgctttttctgttcc 923
Query: 671 ttatcgtctgtggtgtagctgccattattgttgtgaagtttgtgaatcccaacaacaaag 730
|||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct: 924 ttatcgtctgtggtgtagttgccattattgtcgtgaagattgtgaatcccaacaacaaag 983
Query: 731 atattaacgatatcccaggactggcgcctccagctccaaccaggaggcttttgtatgtaa 790
|||| || ||||| ||||| |||||||||||||||| || |||||||||||||||||||
Sbjct: 984 atatcaaggatattccagggttggcgcctccagctcccactaggaggcttttgtatgtaa 1043
Query: 791 ggactggagaaaattttgattaa 813
||||||||||| | |||||||||
Sbjct: 1044 ggactggagaacaatttgattaa 1066
>gnl|LJGI|TC65540 similar to UniRef100_A7NVY7 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 681
Score = 159 bits (80), Expect = 3e-38
Identities = 98/104 (94%)
Strand = Plus / Plus
Query: 710 ttgtgaatcccaacaacaaagatattaacgatatcccaggactggcgcctccagctccaa 769
|||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||
Sbjct: 244 ttgtgaatcccaacaacaaagaaattaaggatatcccaggattggcggctccagctccaa 303
Query: 770 ccaggaggcttttgtatgtaaggactggagaaaattttgattaa 813
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 304 ccaggaggcttttgtatgtaaggactggagagcattttgattaa 347
>gnl|LJGI|TC58796 weakly similar to UniRef100_O76689 Cluster: Sodium-dependent
acetylcholine transporter; n=1; Caenorhabditis
elegans|Rep: Sodium-dependent acetylcholine transporter
- Caenorhabditis elegans, partial (3%)
Length = 790
Score = 159 bits (80), Expect = 3e-38
Identities = 98/104 (94%)
Strand = Plus / Plus
Query: 710 ttgtgaatcccaacaacaaagatattaacgatatcccaggactggcgcctccagctccaa 769
|||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||
Sbjct: 351 ttgtgaatcccaacaacaaagaaattaaggatatcccaggattggcggctccagctccaa 410
Query: 770 ccaggaggcttttgtatgtaaggactggagaaaattttgattaa 813
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 ccaggaggcttttgtatgtaaggactggagagcattttgattaa 454