Miyakogusa Predicted Gene
- Lj6g3v1105040.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1105040.1 Non Chatacterized Hit- tr|I0Z4P9|I0Z4P9_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa
subell,44.96,4e-19,FAMILY NOT NAMED,NULL; LSD1: zinc finger domain,
LSD1 subclass,Zinc finger, LSD1-type; zf-LSD1,Zinc
,NODE_56327_length_431_cov_77.517403.path2.1
(336 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO012063 similar to UniRef100_A7QC17 Cluster: Chromosom... 666 0.0
gnl|LJGI|TC71369 similar to UniRef100_A7QC17 Cluster: Chromosome... 654 0.0
gnl|LJGI|TC63763 similar to UniRef100_A7QC17 Cluster: Chromosome... 634 0.0
gnl|LJGI|GO012790 similar to UniRef100_A7QC17 Cluster: Chromosom... 129 1e-29
gnl|LJGI|TC60650 similar to UniRef100_A7QC17 Cluster: Chromosome... 129 1e-29
gnl|LJGI|GO032574 similar to UniRef100_A7QC17 Cluster: Chromosom... 115 2e-25
gnl|LJGI|TC67625 similar to UniRef100_Q8W195 Cluster: Zinc finge... 107 4e-23
>gnl|LJGI|GO012063 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (84%)
Length = 759
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atgcggtgccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 atgcggtgccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagcc 123
Query: 61 ggcaatgtttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggcaatgtttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaa 183
Query: 121 atgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacg 243
Query: 181 agcgtgagatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaagtcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agcgtgagatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaagtcagt 303
Query: 241 catatccattgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catatccattgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtc 363
Query: 301 aaatgtgcaatttgtcactatattactaatgtcagt 336
||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaatgtgcaatttgtcactatattactaatgtcagt 399
>gnl|LJGI|TC71369 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (54%)
Length = 852
Score = 654 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus
Query: 1 atgcggtgccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atgcggtgccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagcc 196
Query: 61 ggcaatgtttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggcaatgtttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaa 256
Query: 121 atgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacg 316
Query: 181 agcgtgagatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaagtcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agcgtgagatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaagtcagt 376
Query: 241 catatccattgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catatccattgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtc 436
Query: 301 aaatgtgcaatttgtcactatattactaat 330
||||||||||||||||||||||||||||||
Sbjct: 437 aaatgtgcaatttgtcactatattactaat 466
>gnl|LJGI|TC63763 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 1026
Score = 634 bits (320), Expect = 0.0
Identities = 333/336 (99%), Gaps = 1/336 (0%)
Strand = Plus / Plus
Query: 1 atgcggtgccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 132 atgcggtgccagcttgtgtgtaatgggtgtaggaacatcttggtttatc-tagaggagcc 190
Query: 61 ggcaatgtttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ggcaatgtttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaa 250
Query: 121 atgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacg 310
Query: 181 agcgtgagatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaagtcagt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 311 agcgtgagatgttcctgctgcaacacaacaacccgtgtaccagaatctaaccaagccagt 370
Query: 241 catatccattgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catatccattgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtc 430
Query: 301 aaatgtgcaatttgtcactatattactaatgtcagt 336
||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaatgtgcaatttgtcactatattactaatgtcagt 466
>gnl|LJGI|GO012790 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (81%)
Length = 792
Score = 129 bits (65), Expect = 1e-29
Identities = 262/327 (80%), Gaps = 3/327 (0%)
Strand = Plus / Plus
Query: 8 gccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagccggcaatg 67
|||| |||||||||||||| ||||||| ||| || |||| |||||||| || |||||
Sbjct: 311 gccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggcaaccaatg 370
Query: 68 tttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaaatgtcac 127
|||| ||||| | ||| || || ||| |||| ||||| | || ||||| ||||| |
Sbjct: 371 tttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggatatgtctc 430
Query: 128 agctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacgagcgtga 187
| |||||||||||||||||||||||||| |||||||| || ||||||| | || || |
Sbjct: 431 aactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgctagtgtca 490
Query: 188 gatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaagtcagtcatatcc 247
||||||||||||| |||| ||| || || |||| |||| ||||| || |||
Sbjct: 491 gatgttcctgctgtcacactgtaaaccttgctccag---ctaatcaagttgcccacgtcc 547
Query: 248 attgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtcaaatgtg 307
||||||||| ||||||||| | ||||||||||| ||||||||| ||||||||||||||
Sbjct: 548 cttgtgggaattgccggacaaccctcatgtatccatatggagctccctcagtcaaatgtg 607
Query: 308 caatttgtcactatattactaatgtca 334
| ||||||||||||||||||||||||
Sbjct: 608 ctctttgtcactatattactaatgtca 634
>gnl|LJGI|TC60650 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (90%)
Length = 767
Score = 129 bits (65), Expect = 1e-29
Identities = 262/327 (80%), Gaps = 3/327 (0%)
Strand = Plus / Plus
Query: 8 gccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagccggcaatg 67
|||| |||||||||||||| ||||||| ||| || |||| |||||||| || |||||
Sbjct: 294 gccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggcaaccaatg 353
Query: 68 tttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaaatgtcac 127
|||| ||||| | ||| || || ||| |||| ||||| | || ||||| ||||| |
Sbjct: 354 tttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggatatgtctc 413
Query: 128 agctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacgagcgtga 187
| |||||||||||||||||||||||||| |||||||| || ||||||| | || || |
Sbjct: 414 aactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgctagtgtca 473
Query: 188 gatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaagtcagtcatatcc 247
||||||||||||| |||| ||| || || |||| |||| ||||| || |||
Sbjct: 474 gatgttcctgctgtcacactgtaaaccttgctccag---ctaatcaagttgcccacgtcc 530
Query: 248 attgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtcaaatgtg 307
||||||||| ||||||||| | ||||||||||| ||||||||| ||||||||||||||
Sbjct: 531 cttgtgggaattgccggacaaccctcatgtatccatatggagctccctcagtcaaatgtg 590
Query: 308 caatttgtcactatattactaatgtca 334
| ||||||||||||||||||||||||
Sbjct: 591 ctctttgtcactatattactaatgtca 617
>gnl|LJGI|GO032574 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (92%)
Length = 808
Score = 115 bits (58), Expect = 2e-25
Identities = 180/220 (81%), Gaps = 3/220 (1%)
Strand = Plus / Plus
Query: 115 atggaaatgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatgga 174
||||| ||||| || |||||||||||||||||| ||||||| |||||||| || ||||
Sbjct: 357 atggatatgtctcaactttattgtggaggctgtgggacattgctaatgtacacacgtgga 416
Query: 175 gctacgagcgtgagatgttcctgctgcaacacaataacccgtgtaccagaatctaaccaa 234
||| | || || |||||||||||||| |||| ||| || || |||| |||| |||
Sbjct: 417 gctgctagtgtcagatgttcctgctgtcacactgtaaaccttgccccag---ctaatcaa 473
Query: 235 gtcagtcatatccattgtgggaactgccggacagcactcatgtatcctcatggagctctc 294
|| || ||| ||||||||| ||||||||| | ||||||||||| ||||||||| |
Sbjct: 474 gttgcccacgtcccttgtgggaattgccggacaaccctcatgtatccatatggagctccc 533
Query: 295 tcagtcaaatgtgcaatttgtcactatattactaatgtca 334
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 534 tcagtcaaatgtgctctttgtcactatattactaatgtca 573
>gnl|LJGI|TC67625 similar to UniRef100_Q8W195 Cluster: Zinc finger protein LSD1; n=1;
Brassica oleracea|Rep: Zinc finger protein LSD1 -
Brassica oleracea (Wild cabbage), partial (50%)
Length = 829
Score = 107 bits (54), Expect = 4e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 249 ttgtgggaactgccggacagcactcatgtatcctcatggagctctctcagtcaaatgtgc 308
||||||||| ||||||||| | ||||||||||| ||||||||| |||||||||||||||
Sbjct: 34 ttgtgggaattgccggacaaccctcatgtatccatatggagctccctcagtcaaatgtgc 93
Query: 309 aatttgtcactatattactaatgtca 334
||||||||||||||||||||||||
Sbjct: 94 tctttgtcactatattactaatgtca 119