Miyakogusa Predicted Gene

Lj6g3v1104890.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1104890.1 Non Chatacterized Hit- tr|B3RY12|B3RY12_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,40.21,0.0000000002,RNA-binding domain, RBD,NULL; RRM,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL;
TRANSCRIPT,CUFF.59104.1
         (1701 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67094 similar to UniRef100_A2Q361 Cluster: RNA-bindin...  1568   0.0  

>gnl|LJGI|TC67094 similar to UniRef100_A2Q361 Cluster: RNA-binding region RNP-1 (RNA
           recognition motif); Pyridoxal-dependent decarboxylase;
           n=1; Medicago truncatula|Rep: RNA-binding region RNP-1
           (RNA recognition motif); Pyridoxal-dependent
           decarboxylase - Medicago truncatula (Barrel medic),
           partial (32%)
          Length = 832

 Score = 1568 bits (791), Expect = 0.0
 Identities = 794/795 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggaagaggaacaagagcaaagtgcagtgagaatcttcgtcggaggattgggtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  atggaggaagaggaacaagagcaaagtgcagtgagaatcttcgtcggaggattgggtgaa 97

                                                                       
Query: 61  gccgtcaccggcgatgatctccagcggctattcgcttctctcggcaccgtccaatcaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  gccgtcaccggcgatgatctccagcggctattcgcttctctcggcaccgtccaatcaatc 157

                                                                       
Query: 121 gacacaatccgaaccaaaggccgcagcctcgcctacctcgacttcatcccctcccccacc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 158 gacacaatccgaaccaaaggccgcagcttcgcctacctcgacttcatcccctcccccacc 217

                                                                       
Query: 181 gatcccaaatcgctcaccaagctcttcagcaagtacaatggctgcgcatggaagggtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gatcccaaatcgctcaccaagctcttcagcaagtacaatggctgcgcatggaagggtgga 277

                                                                       
Query: 241 aggctcagactcgagaaagccaaagagaattaccttgcacggttgaagaaagaatgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggctcagactcgagaaagccaaagagaattaccttgcacggttgaagaaagaatgggaa 337

                                                                       
Query: 301 gaagaagctctggttaacagtatccaatcaccatctgatgatgatgatgttcctgctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaagaagctctggttaacagtatccaatcaccatctgatgatgatgatgttcctgctcag 397

                                                                       
Query: 361 aataatgaattggaggaaaacccgaatgcgagacgcgcttcgaatattccagacacgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aataatgaattggaggaaaacccgaatgcgagacgcgcttcgaatattccagacacgaag 457

                                                                       
Query: 421 cagctcagggttttctttcccagattgagaaaggtgaaatctataccattcagtggatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cagctcagggttttctttcccagattgagaaaggtgaaatctataccattcagtggatct 517

                                                                       
Query: 481 ggcaagcacaaatatagtttccagaatattaaagttcctccgatgcccgtgcatttttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggcaagcacaaatatagtttccagaatattaaagttcctccgatgcccgtgcatttttgt 577

                                                                       
Query: 541 gattgtgaggaacattgtagtccttttgtcaaagaaagaggaaaagtgccttctcatggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gattgtgaggaacattgtagtccttttgtcaaagaaagaggaaaagtgccttctcatggg 637

                                                                       
Query: 601 acagcagaaattggtggaataaatgatgaagaaattaacataatgaatgctgtgatgaac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acagcagaaattggtggaataaatgatgaagaaattaacataatgaatgctgtgatgaac 697

                                                                       
Query: 661 aagctatttgaaaaagaaaaggtttccaacaccaaggatcttgaaaaggggcaggattcc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aagctatttgaaaaagaaaaggtttccaacaccaaggatcttgaaaaggggcaggattcc 757

                                                                       
Query: 721 tttaaatcacctgatgctttacctttaaatgaatgtgaagtagatagtgcaaccgatgat 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tttaaatcacctgatgctttacctttaaatgaatgtgaagtagatagtgcaaccgatgat 817

                          
Query: 781 gatgatgacggtctc 795
           |||||||||||||||
Sbjct: 818 gatgatgacggtctc 832