Miyakogusa Predicted Gene

Lj6g3v1091180.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1091180.1 Non Chatacterized Hit- tr|I1LNR1|I1LNR1_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=3,71.26,0,no
description,Pectin lyase fold; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; POLYGALACTURONASE,gene.g65711.t1.1
         (786 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73249 weakly similar to UniRef100_UPI0000162B6A Clust...    54   1e-06

>gnl|LJGI|TC73249 weakly similar to UniRef100_UPI0000162B6A Cluster: glycoside
           hydrolase family 28 protein / polygalacturonase
           (pectinase) family protein; n=1; Arabidopsis
           thaliana|Rep: glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein -
           Arabidopsis thaliana, partial (40%)
          Length = 720

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 301 tgtggaccaggccatggtataagtgtaggaagccttgga 339
           ||||||||||||||||| ||||| || ||||||||||||
Sbjct: 159 tgtggaccaggccatgggataagcgttggaagccttgga 197