Miyakogusa Predicted Gene

Lj6g3v1078200.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1078200.1 Non Chatacterized Hit- tr|B9FM15|B9FM15_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,33.94,0.0000008,RRM,RNA recognition motif domain; seg,NULL; RNA
recognition motif,RNA recognition motif domain; FAMI,CUFF.58970.1
         (991 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS335970 UniRef100_A9C3A1 Cluster: ABC transporter rela...   977   0.0  

>gnl|LJGI|FS335970 UniRef100_A9C3A1 Cluster: ABC transporter related; n=1; Delftia
           acidovorans SPH-1|Rep: ABC transporter related -,
           partial (2%)
          Length = 596

 Score =  977 bits (493), Expect = 0.0
 Identities = 518/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagagagagaggctctgacgggttgccttcacggtggtggccccaatcacggcagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  atgagagagagaggctctgacgggttgccttcacggtggtggccccaatcacggcagtgg 125

                                                                       
Query: 61  ccccaatcacggcggtggccggcgcaaggtcatgtctggcgggcgaatcggtggttgcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ccccaatcacggcggtggccggcgcaaggtcatgtctggcgggcgaatcggtggttgcga 185

                                                                       
Query: 121 acggagattcagtccaatggctacgaaccaaacaatcgagtgaggcaccagagctcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acggagattcagtccaatggctacgaaccaaacaatcgagtgaggcaccagagctcctgg 245

                                                                       
Query: 181 aacacgcaacggcaaaactggttgccacgatggaagcaggagcaccaaacatcacagcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aacacgcaacggcaaaactggttgccacgatggaagcaggagcaccaaacatcacagcgt 305

                                                                       
Query: 241 gagtggcggccatggcttgggagcgatcgagaggatcagcactatcagaggagtatacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gagtggcggccatggcttgggagcgatcgagaggatcagcactatcagaggagtatacca 365

                                                                       
Query: 301 gcggactcagt-nnnnnnnnntagccagcgcaagacggtatctcgtgttggtcaggacgt 359
           |||||||||||          |||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcggactcagtaaaaaaaaaatagccagcgcaagacggtatctcgtgttggtcaggacgt 425

                                                                       
Query: 360 gaagacacagggccagtctttctcagtctatgtagatggtttgagtgacaggattacctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaagacacagggccagtctttctcagtctatgtagatggtttgagtgacaggattacctt 485

                                                                       
Query: 420 gataaaattgaaaacaattttcggaaaggcagggagagtgaaggatgtcttcatccaatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gataaaattgaaaacaattttcggaaaggcagggagagtgaaggatgtcttcatccaatt 545

                                                           
Query: 480 caagagaaaatttcagcggcgttttcggtacggatttgttcggtttca 527
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caagagaaaatttcagcggcgttttcggtacggatttgttcggtttca 593