Miyakogusa Predicted Gene
- Lj6g3v1077630.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1077630.1 tr|B0CCD4|B0CCD4_ACAM1 Nucleoid-associated
protein AM1_1798 OS=Acaryochloris marina (strain MBIC
110,47,0.000000000000006,YbaB-like,YbaB-like DNA-binding protein; no
description,YbaB-like DNA-binding protein; YbaB_DNA_bd,Y,CUFF.58937.1
(570 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63255 similar to UniRef100_O82230 Cluster: Expressed ... 1130 0.0
gnl|LJGI|TC79164 similar to UniRef100_O82230 Cluster: Expressed ... 321 3e-87
gnl|LJGI|TC77875 similar to UniRef100_O82230 Cluster: Expressed ... 180 6e-45
gnl|LJGI|TC81400 similar to UniRef100_A7PV25 Cluster: Chromosome... 178 2e-44
>gnl|LJGI|TC63255 similar to UniRef100_O82230 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (63%)
Length = 730
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 1 atggcgtccactgtctctctaccaaacgcaatcggactctgtccccggaacaaccatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 atggcgtccactgtctctctaccaaacgcaatcggactctgtccccggaacaaccatacc 83
Query: 61 ctttcatcaacttctcactgtaaactaaactccagttcaagtatagttgacatgaagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctttcatcaacttctcactgtaaactaaactccagttcaagtatagttgacatgaagata 143
Query: 121 ttacctcagagtggtagtcgtaaagctggacatggccaaagacatttacgattatatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttacctcagagtggtagtcgtaaagctggacatggccaaagacatttacgattatatggc 203
Query: 181 ctatttggagggaaaaaagatggtgatgattcacctaataagggaggaattcttggaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctatttggagggaaaaaagatggtgatgattcacctaataagggaggaattcttggaaac 263
Query: 241 atgcaaaacctttatgagactgtgaagaaggcgcaaatggtcgtccaagttgaagcagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgcaaaacctttatgagactgtgaagaaggcgcaaatggtcgtccaagttgaagcagtg 323
Query: 301 agggtgcaaaaagaacttgcggcagcagaatttgatggttattgtgagggtgagttagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agggtgcaaaaagaacttgcggcagcagaatttgatggttattgtgagggtgagttagtg 383
Query: 361 aaggtaacgctgtctggaaaccagcaacccttacgaacagaaattactgaggcagctatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggtaacgctgtctggaaaccagcaacccttacgaacagaaattactgaggcagctatg 443
Query: 421 gaattcggatcagaaaaactttcgcttttaatcactgaagcttacaaggatgcacaccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaattcggatcagaaaaactttcgcttttaatcactgaagcttacaaggatgcacaccag 503
Query: 481 aagagtgtccaggccatgaaggaaagaatgagtgatcttgctcagagcttaggagtgcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagagtgtccaggccatgaaggaaagaatgagtgatcttgctcagagcttaggagtgcct 563
Query: 541 gaagggattaatgaaggaatgaagtgatgg 570
||||||||||||||||||||||||||||||
Sbjct: 564 gaagggattaatgaaggaatgaagtgatgg 593
>gnl|LJGI|TC79164 similar to UniRef100_O82230 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (65%)
Length = 1070
Score = 321 bits (162), Expect = 3e-87
Identities = 270/306 (88%)
Strand = Plus / Plus
Query: 225 aggaattcttggaaacatgcaaaacctttatgagactgtgaagaaggcgcaaatggtcgt 284
|||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||
Sbjct: 350 aggaatgcttggaaacatgcaaaatctttacgagaccgtgaagaaggcgcagatggttgt 409
Query: 285 ccaagttgaagcagtgagggtgcaaaaagaacttgcggcagcagaatttgatggttattg 344
|||||||||||||||| | || || ||||||||||| |||||||| ||||||||||| ||
Sbjct: 410 ccaagttgaagcagtgcgagtacagaaagaacttgctgcagcagagtttgatggttactg 469
Query: 345 tgagggtgagttagtgaaggtaacgctgtctggaaaccagcaacccttacgaacagaaat 404
|||| ||||||| | |||||||| || ||||| || |||||||| || ||||| |||
Sbjct: 470 cgaggatgagttaattaaggtaacactatctgggaatcagcaacctataagaacaataat 529
Query: 405 tactgaggcagctatggaattcggatcagaaaaactttcgcttttaatcactgaagctta 464
||||||||| ||||||||||| ||| ||||||||||||| |||||| ||||||| || ||
Sbjct: 530 tactgaggctgctatggaattgggaccagaaaaactttcacttttagtcactgaggcata 589
Query: 465 caaggatgcacaccagaagagtgtccaggccatgaaggaaagaatgagtgatcttgctca 524
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 590 caaggatgcacatcagaagagtgtccaggccatgaaggaaagaatgagtggtcttgcgca 649
Query: 525 gagctt 530
||||||
Sbjct: 650 gagctt 655
Score = 63.9 bits (32), Expect = 1e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 60 cctttcatcaacttctcactgtaaactaaactccagttcaagtatagttgacatga 115
||||| ||||||||||| ||||||||||||||||||| | | | ||||||||||||
Sbjct: 188 ccttttatcaacttctctctgtaaactaaactccagtgcgaatgtagttgacatga 243
>gnl|LJGI|TC77875 similar to UniRef100_O82230 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (45%)
Length = 749
Score = 180 bits (91), Expect = 6e-45
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 225 aggaattcttggaaacatgcaaaacctttatgagactgtgaagaaggcgcaaatggtcgt 284
|||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||
Sbjct: 406 aggaatgcttggaaacatgcaaaatctttacgagaccgtgaagaaggcgcagatggttgt 465
Query: 285 ccaagttgaagcagtgagggtgcaaaaagaacttgcggcagcagaatttgatggttattg 344
|||||||||||||||| | || || ||||||||||| |||||||| ||||||||||| ||
Sbjct: 466 ccaagttgaagcagtgcgagtacagaaagaacttgctgcagcagagtttgatggttactg 525
Query: 345 tgagggtgagttagtgaaggtaacgctgtctggaaaccagcaacccttacgaacagaaat 404
|||| ||||||| | |||||||| || ||||| || |||||| | || ||||| |||
Sbjct: 526 cgaggatgagttaattaaggtaacactatctgggaatcagcaatctataagaacaataat 585
Query: 405 tactgaggcagctatggaattcggatcagaa 435
||||||||| ||||||||||| ||| |||||
Sbjct: 586 tactgaggctgctatggaattgggaccagaa 616
Score = 63.9 bits (32), Expect = 1e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 60 cctttcatcaacttctcactgtaaactaaactccagttcaagtatagttgacatga 115
||||| ||||||||||| ||||||||||||||||||| | | | ||||||||||||
Sbjct: 244 ccttttatcaacttctctctgtaaactaaactccagtgcgaatgtagttgacatga 299
>gnl|LJGI|TC81400 similar to UniRef100_A7PV25 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 832
Score = 178 bits (90), Expect = 2e-44
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 481 aagagtgtccaggccatgaaggaaagaatgagtgatcttgctcagagcttaggagtgcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aagagtgtccaggccatgaaggaaagaatgagtgatcttgctcagagcttaggagtgcct 64
Query: 541 gaagggattaatgaaggaatgaagtgatgg 570
||||||||||||||||||||||||||||||
Sbjct: 65 gaagggattaatgaaggaatgaagtgatgg 94