Miyakogusa Predicted Gene

Lj6g3v1077540.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1077540.1 tr|B9IMC3|B9IMC3_POPTR Stress-induced hydrophobic
peptide (Fragment) OS=Populus trichocarpa
GN=POPTR,85.19,3e-19,SUBFAMILY NOT NAMED,NULL; HYDROPHOBIC PROTEIN
RCI2 (LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6,CUFF.58928.1
         (345 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67141 similar to UniRef100_O82232 Cluster: UPF0057 me...   159   1e-38

>gnl|LJGI|TC67141 similar to UniRef100_O82232 Cluster: UPF0057 membrane protein
           At2g24040; n=1; Arabidopsis thaliana|Rep: UPF0057
           membrane protein At2g24040 - Arabidopsis thaliana
           (Mouse-ear cress), partial (96%)
          Length = 641

 Score =  159 bits (80), Expect = 1e-38
 Identities = 152/176 (86%)
 Strand = Plus / Plus

                                                                       
Query: 163 gtcttactccctccagtaggagtttgcttccgccacggttgctgcagtgttgaattcatc 222
           ||||| ||||||||| | ||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 160 gtcttgctccctccactcggagtttgcttgcgccatggttgctgcactgttgaattcatc 219

                                                                       
Query: 223 atctgcttgctactgactatactgggatacattccaggaataatttatgccctgtatgct 282
           |||||||||||||| ||||| ||||| || || || || |||||||||||||| ||||| 
Sbjct: 220 atctgcttgctacttactattctgggctatatccctggtataatttatgccctctatgcg 279

                                                                   
Query: 283 attgtctacgttgatcaggatcagtattttgatgaatataggcgtcccctgtatgc 338
           ||| |||   ||||||  |||||||| |||||||||| ||||||||| ||||||||
Sbjct: 280 attatctttattgatcgtgatcagtactttgatgaatctaggcgtcctctgtatgc 335