Miyakogusa Predicted Gene

Lj6g3v1052260.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1052260.1 Non Chatacterized Hit- tr|B9S9Z2|B9S9Z2_RICCO
Glycine-rich RNA-binding protein, putative OS=Ricinus
,55.42,2e-19,RRM,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
rec,CUFF.58840.1
         (414 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67273 similar to UniRef100_A7PX80 Cluster: Chromosome...   821   0.0  

>gnl|LJGI|TC67273 similar to UniRef100_A7PX80 Cluster: Chromosome chr12 scaffold_36,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr12 scaffold_36, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (88%)
          Length = 571

 Score =  821 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaacaaaaagcctctcacgtttcttgccacaaccatttcggccaagttcaacgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28  atgaacaaaaagcctctcacgtttcttgccacaaccatttcggccaagttcaacgttcct 87

                                                                       
Query: 61  cctcgattctactgttctccaacctcgcctccctcttctccttcgtccaacaagctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  cctcgattctactgttctccaacctcgcctccctcttctccttcgtccaacaagctcttt 147

                                                                       
Query: 121 gtcggagggctgtcatggtcagttgacgagaagtccctccaagacgctttctcttcgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtcggagggctgtcatggtcagttgacgagaagtccctccaagacgctttctcttcgttc 207

                                                                       
Query: 181 ggacaagtcactgaagtgaggatcgtgtatgataaagacagtggaaggtctagaggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggacaagtcactgaagtgaggatcgtgtatgataaagacagtggaaggtctagaggcttt 267

                                                                       
Query: 241 ggatttgtcatcttttcagctgaagatgatgccaaatctgcaaaggattcaatgaatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggatttgtcatcttttcagctgaagatgatgccaaatctgcaaaggattcaatgaatgga 327

                                                                       
Query: 301 aaggcattgttaggtagaccattgaggattagttttgctctcgagaaggcccgtggtgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaggcattgttaggtagaccattgaggattagttttgctctcgagaaggcccgtggtgta 387

                                                                 
Query: 361 cctattgtagttcccagattttcaaatattggaaatttaaacaagcactagttc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctattgtagttcccagattttcaaatattggaaatttaaacaagcactagttc 441