Miyakogusa Predicted Gene

Lj6g3v1048880.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v1048880.1 Non Chatacterized Hit- tr|K4C831|K4C831_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,28.63,0.000000006,AP2,AP2/ERF domain; seg,NULL; DNA-binding
domain in plant proteins such as,AP2/ERF domain;
SUBFAMILY,CUFF.58806.1
         (774 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75721 similar to UniRef100_Q94AN4 Cluster: AP2-like e...   149   3e-35
gnl|LJGI|DC594646 homologue to UniRef100_A7PFK0 Cluster: Chromos...   113   2e-24
gnl|LJGI|TC58976 homologue to UniRef100_A9JQY7 Cluster: AP2 prot...    52   5e-06

>gnl|LJGI|TC75721 similar to UniRef100_Q94AN4 Cluster: AP2-like ethylene-responsive
           transcription factor At1g16060; n=1; Arabidopsis
           thaliana|Rep: AP2-like ethylene-responsive transcription
           factor At1g16060 - Arabidopsis thaliana (Mouse-ear
           cress), partial (57%)
          Length = 1390

 Score =  149 bits (75), Expect = 3e-35
 Identities = 198/239 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  attggatcattaaggaggaaaagcagcggtttttctcgtggtgtctctaaatacaggggc 87
           |||||||| ||||| || | |||||| || || ||||| || ||||| |||||||| || 
Sbjct: 442 attggatccttaagaagaagaagcagtgggttctctcgaggagtctcaaaatacagagga 501

                                                                       
Query: 88  gttgcaagacaccatcataatggaagatgggaggctcggattggcagggttttcggcaac 147
           |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |  ||||||
Sbjct: 502 gttgcaagacaccaccataacggaagatgggaagctcgaattggcagggtctcgggcaac 561

                                                                       
Query: 148 aagtacctttacctcggaacttatgctacacaagaagaagctgcaacagcatatgatatg 207
           || || || ||||| |||||||| ||||||||||||||||| || | ||||||||| | |
Sbjct: 562 aaatatctataccttggaacttacgctacacaagaagaagcagccatagcatatgacagg 621

                                                                      
Query: 208 gcagcaattgaatatcgtggactcaatgctgttaccaattttgacctaagccgttacat 266
           ||||| ||  | ||||| ||||| |||||  |||| || || ||||| |||||||||||
Sbjct: 622 gcagccataaagtatcgaggacttaatgccattacaaacttcgacctcagccgttacat 680


>gnl|LJGI|DC594646 homologue to UniRef100_A7PFK0 Cluster: Chromosome chr11
           scaffold_14, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr11 scaffold_14, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (17%)
          Length = 551

 Score =  113 bits (57), Expect = 2e-24
 Identities = 144/173 (83%)
 Strand = Plus / Plus

                                                                       
Query: 94  agacaccatcataatggaagatgggaggctcggattggcagggttttcggcaacaagtac 153
           |||||||| ||||| ||||||||||| ||||| ||||||||||| |  |||||||| || 
Sbjct: 378 agacaccaccataacggaagatgggaagctcgaattggcagggtctcgggcaacaaatat 437

                                                                       
Query: 154 ctttacctcggaacttatgctacacaagaagaagctgcaacagcatatgatatggcagca 213
           || ||||| |||||||| ||||||||||||||||| || | ||||||||| | |||||| 
Sbjct: 438 ctataccttggaacttacgctacacaagaagaagcagccatagcatatgacagggcagcc 497

                                                                
Query: 214 attgaatatcgtggactcaatgctgttaccaattttgacctaagccgttacat 266
           ||  | ||||| ||||| |||||  |||| || || ||||| |||||||||||
Sbjct: 498 ataaagtatcgaggacttaatgccattacaaacttcgacctcagccgttacat 550


>gnl|LJGI|TC58976 homologue to UniRef100_A9JQY7 Cluster: AP2 protein; n=1; Elaeis
            guineensis|Rep: AP2 protein - Elaeis guineensis var.
            tenera (Oil palm), partial (42%)
          Length = 1188

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 174  tacacaagaagaagctgcaacagcatatgatatggcagcaat 215
            |||||||||||||||||||  ||||||||| || ||||||||
Sbjct: 998  tacacaagaagaagctgcagaagcatatgacattgcagcaat 1039