Miyakogusa Predicted Gene
- Lj6g3v0933510.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0933510.1 tr|G7K6H0|G7K6H0_MEDTR E3 ubiquitin-protein
ligase synoviolin OS=Medicago truncatula
GN=MTR_5g007710,81.41,0,RING/U-box,NULL; seg,NULL;
SYNOVIOLIN-RELATED,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; ,CUFF.58689.1
(1653 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57379 similar to UniRef100_A7PBD1 Cluster: Chromosome... 1489 0.0
gnl|LJGI|TC80467 similar to UniRef100_A7PBD1 Cluster: Chromosome... 735 0.0
gnl|LJGI|TC63500 718 0.0
>gnl|LJGI|TC57379 similar to UniRef100_A7PBD1 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (49%)
Length = 838
Score = 1489 bits (751), Expect = 0.0
Identities = 751/751 (100%)
Strand = Plus / Plus
Query: 1 atgatgaggctgaaaacatatgctggtctgagcttgatagcaactttggctatcacatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atgatgaggctgaaaacatatgctggtctgagcttgatagcaactttggctatcacatat 147
Query: 61 catgcatttaacagtaggggtcagttttatccggcgatggtgtatctctcgacttccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 catgcatttaacagtaggggtcagttttatccggcgatggtgtatctctcgacttccaag 207
Query: 121 atcagtttggtgcttcttctcaacatgggtttggttatcatgtgcactctttggcaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atcagtttggtgcttcttctcaacatgggtttggttatcatgtgcactctttggcaattg 267
Query: 181 accaaaaagctgttcctgggttcccttcgggaggcggaggttgagaggcttaatgagcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 accaaaaagctgttcctgggttcccttcgggaggcggaggttgagaggcttaatgagcag 327
Query: 241 tcgtggagggaggttatggaaatcctctttgccattactattttccggcaggacttctcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcgtggagggaggttatggaaatcctctttgccattactattttccggcaggacttctcg 387
Query: 301 gttacgttccttgccatggtcaccgcgctgttattgattaaggctttgcattggttggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gttacgttccttgccatggtcaccgcgctgttattgattaaggctttgcattggttggca 447
Query: 361 cagaagagagtcgagtacatcgagaccactccttcggtgacttggctatcccatgttcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagaagagagtcgagtacatcgagaccactccttcggtgacttggctatcccatgttcga 507
Query: 421 atcgtatcttttatgggtttcctcctccttctggatagcattttcttatatagttctatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atcgtatcttttatgggtttcctcctccttctggatagcattttcttatatagttctatg 567
Query: 481 aaacatttgatagaaacgtggcaggcttcggtttcactattcttttctttcgagtacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaacatttgatagaaacgtggcaggcttcggtttcactattcttttctttcgagtacatg 627
Query: 541 atattggcaacaacaacagtttcgatttttgtaaaatatattttctatgtcagtgacatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atattggcaacaacaacagtttcgatttttgtaaaatatattttctatgtcagtgacatg 687
Query: 601 cttatggagggacagtgggaaaagaaaccagtcttcacattttacctggaacttatcaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cttatggagggacagtgggaaaagaaaccagtcttcacattttacctggaacttatcaga 747
Query: 661 gacttgcttcacttgtctatgtatctgtgcttctttttcttgatatttgtgaactatggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gacttgcttcacttgtctatgtatctgtgcttctttttcttgatatttgtgaactatggt 807
Query: 721 attcccctgcacctaatacgggagctgtacg 751
|||||||||||||||||||||||||||||||
Sbjct: 808 attcccctgcacctaatacgggagctgtacg 838
>gnl|LJGI|TC80467 similar to UniRef100_A7PBD1 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 373
Score = 735 bits (371), Expect = 0.0
Identities = 371/371 (100%)
Strand = Plus / Plus
Query: 740 gggagctgtacgagacatttaggaatttcaaagttcgtattgcagattacattagatatc 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggagctgtacgagacatttaggaatttcaaagttcgtattgcagattacattagatatc 62
Query: 800 gtaagatcacttcaaatatgaatgatcgctttccagatgccacacctgaagagcttaatg 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gtaagatcacttcaaatatgaatgatcgctttccagatgccacacctgaagagcttaatg 122
Query: 860 caagggacgcaacctgcataatctgtcgtgaagagatgactacagccaagaaacttatat 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 caagggacgcaacctgcataatctgtcgtgaagagatgactacagccaagaaacttatat 182
Query: 920 gtggacatctttttcatgttcattgcctccgatcatggctggagcggcagcatacttgcc 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtggacatctttttcatgttcattgcctccgatcatggctggagcggcagcatacttgcc 242
Query: 980 ctacctgccgagccttggttgtgccaccagaaaatggaacaactgttgctggagggcagc 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctacctgccgagccttggttgtgccaccagaaaatggaacaactgttgctggagggcagc 302
Query: 1040 aaggatcacagtcagatggtcaccggcagggaactgggacagctggaagcacagctcaaa 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaggatcacagtcagatggtcaccggcagggaactgggacagctggaagcacagctcaaa 362
Query: 1100 atgaagctggc 1110
|||||||||||
Sbjct: 363 atgaagctggc 373
>gnl|LJGI|TC63500
Length = 743
Score = 718 bits (362), Expect = 0.0
Identities = 362/362 (100%)
Strand = Plus / Plus
Query: 1292 aacaagcacaaaagcagtttcttatccctggtcaaccaacaaatgtatcctttcctccaa 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaagcacaaaagcagtttcttatccctggtcaaccaacaaatgtatcctttcctccaa 60
Query: 1352 tgggacactacaattttctgccttcccaaacgtttgcagcccctgtgaattatggagaag 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggacactacaattttctgccttcccaaacgtttgcagcccctgtgaattatggagaag 120
Query: 1412 cgtttggaaatgatccaaacatcccaagctctcagctggaagctcatagaaaatttctcc 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtttggaaatgatccaaacatcccaagctctcagctggaagctcatagaaaatttctcc 180
Query: 1472 gatggcagattgaggttttggaaaagcagttacggaatcttccagagacaaaagctgatg 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatggcagattgaggttttggaaaagcagttacggaatcttccagagacaaaagctgatg 240
Query: 1532 acagaagtgtagatgacggcacatcatcatcagatagcagaggcaagcttattacttcat 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acagaagtgtagatgacggcacatcatcatcagatagcagaggcaagcttattacttcat 300
Query: 1592 cgtcatctgtttctggtcatgttcaccatgatgaggagattcaagatgggaaagcctaaa 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtcatctgtttctggtcatgttcaccatgatgaggagattcaagatgggaaagcctaaa 360
Query: 1652 at 1653
||
Sbjct: 361 at 362