Miyakogusa Predicted Gene
- Lj6g3v0921010.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0921010.1 Non Chatacterized Hit- tr|I1N0W8|I1N0W8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,86.84,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
RNA-binding domain, RBD,NULL; RRM_2,RNA recognition,CUFF.58558.1
(2280 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64908 homologue to UniRef100_Q6J739 Cluster: AML1; n=... 708 0.0
gnl|LJGI|AV772510 similar to UniRef100_Q6J739 Cluster: AML1; n=1... 666 0.0
gnl|LJGI|TC64639 similar to UniRef100_Q6J739 Cluster: AML1; n=1;... 476 e-133
gnl|LJGI|TC81572 similar to UniRef100_Q6J738 Cluster: AML5 (RNA-... 109 8e-23
>gnl|LJGI|TC64908 homologue to UniRef100_Q6J739 Cluster: AML1; n=1; Medicago
truncatula|Rep: AML1 - Medicago truncatula (Barrel
medic), partial (14%)
Length = 1116
Score = 708 bits (357), Expect = 0.0
Identities = 357/357 (100%)
Strand = Plus / Plus
Query: 1924 aatgtgggttatgctttcatcaatatggtgtctccttcacacatcgtccccttctttaag 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgtgggttatgctttcatcaatatggtgtctccttcacacatcgtccccttctttaag 60
Query: 1984 gcatttaatgggaagaaatgggagaaatttaatagtgaaaaagttgcttcgctagcatat 2043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcatttaatgggaagaaatgggagaaatttaatagtgaaaaagttgcttcgctagcatat 120
Query: 2044 gcacggatacaaggaaaggctgcgcttgtgatgcattttcagaactcaagcttaatgaat 2103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcacggatacaaggaaaggctgcgcttgtgatgcattttcagaactcaagcttaatgaat 180
Query: 2104 gaggacaagcggtgccgacctattctctttcattcagagggccaaggtactggtgaccag 2163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggacaagcggtgccgacctattctctttcattcagagggccaaggtactggtgaccag 240
Query: 2164 gaacatcttctgtccagcaatttgaatatctgcattcgtcaaccggatgggtcgtacaca 2223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaacatcttctgtccagcaatttgaatatctgcattcgtcaaccggatgggtcgtacaca 300
Query: 2224 ggtgatttgttggagagcccaaagggcaatttggatgagaagctagagaaagattaa 2280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtgatttgttggagagcccaaagggcaatttggatgagaagctagagaaagattaa 357
>gnl|LJGI|AV772510 similar to UniRef100_Q6J739 Cluster: AML1; n=1; Medicago
truncatula|Rep: AML1 - Medicago truncatula (Barrel
medic), partial (12%)
Length = 444
Score = 666 bits (336), Expect = 0.0
Identities = 413/432 (95%), Gaps = 5/432 (1%)
Strand = Plus / Plus
Query: 806 aactgagtcaagaactggaacaagatgaaactcgcacttttaggcatcaagtaggttcac 865
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14 aactgagtcaggaactggaaca-gatgaaactcgcacttttaggcatcaagtaggttcag 72
Query: 866 ctctggccaattctcctcctggtaactgggcacattttggtagtccaattgaacctaatc 925
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 73 ctctggccaattctcctcctggtaactgggcacatttgggtagtccaattgaacctaatc 132
Query: 926 cattaggctcttttagcaagtctcc-tggtttgggtcatgcaagccc-tatgagtaccaa 983
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 133 cattaggctcttttagcaagtctccgtggtttgggtcatgcaagcccgtatgagtaccaa 192
Query: 984 c-catttgtcagg-attggctgctcttctttccccacatacatcaagccctaccaaggtt 1041
| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cgcattggtcagggattggttgctcttctttccccacatacatcaagccctaccaaggtc 252
Query: 1042 gcacccattgggaaggaccctcgaagggttacacatcagttgttcgctaactctggatca 1101
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcagccatggggaaggaccctcgaagggttacacatcagttgttcgctaactctggatca 312
Query: 1102 acactaggagcagcttttcagcattctatgtcatttcccgagcaaaaagtaaatgcaact 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acactaggagcagcttttcagcattctatgtcatttcccgagcaaaaagtaaatgcaact 372
Query: 1162 cctagacctacatctacgtttggtgaatcacattcaagttcatcaagtattggaacactg 1221
|||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 373 cctaaacctacatctacgttgggtgaatcacattcaagttcatcagggtatggaacactg 432
Query: 1222 tctggtcctcaa 1233
||||||||||||
Sbjct: 433 tctggtcctcaa 444
>gnl|LJGI|TC64639 similar to UniRef100_Q6J739 Cluster: AML1; n=1; Medicago
truncatula|Rep: AML1 - Medicago truncatula (Barrel
medic), partial (14%)
Length = 744
Score = 476 bits (240), Expect = e-133
Identities = 243/244 (99%)
Strand = Plus / Plus
Query: 1 atggaaaccaatgcaattggaaacctgcttccggatgatgaagatgagcttttagctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggaaaccaatgcaattggaaacctgcttccggatgatgaagatgagcttttagctggg 560
Query: 61 ataatggatgattttgaccttactaggttacccattcaattggaggatttggatgaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataatggatgattttgaccttactaggttacccattcaattggaggatttggatgaaaat 620
Query: 121 gatctgtttgccaatggtgggggatttgaaatggactttgaaccacaagacagccttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatctgtttgccaatggtgggggatttgaaatggactttgaaccacaagacagccttagt 680
Query: 181 attggtctgtcaaagataagcatatcagatggacttgcttcgagtggtattgcacagtat 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 attggtctgtcaaagataagcatatcagatagacttgcttcgagtggtattgcacagtat 740
Query: 241 gcaa 244
||||
Sbjct: 741 gcaa 744
>gnl|LJGI|TC81572 similar to UniRef100_Q6J738 Cluster: AML5 (RNA-binding region RNP-1
(RNA recognition motif); RNA recognition motif 2); n=1;
Medicago truncatula|Rep: AML5 (RNA-binding region RNP-1
(RNA recognition motif); RNA recognition motif 2) -
Medicago truncatula (Barrel medic), partial (27%)
Length = 1056
Score = 109 bits (55), Expect = 8e-23
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 277 catccttatggagagcatccgtcaaggacactatttgttcgaaacatcaacagtaatgtt 336
||||| |||||||||||||| || | || ||||||||||||| || ||||||||||||
Sbjct: 829 catccatatggagagcatccttctcgaaccttatttgttcgaaatattaacagtaatgtt 888
Query: 337 gaggactctgaactaagaatactatttgagcaatatggggatatcagaacgttgtacaca 396
||||| || || |||| || |||||||||||||| ||||| ||||| |||| ||
Sbjct: 889 gaggattcggagctaaaggccctttttgagcaatatggtgatattagaaccctgtatact 948
Query: 397 gcatgcaagcataggggctttgtgatgatatcttactatgacattcgagctgctcgtact 456
||||| ||||| |||| ||||| |||||||| ||||||||||| || |||||||| ||
Sbjct: 949 gcatgtaagcaccgggggtttgtaatgatatcgtactatgacatccgtgctgctcgaaca 1008
Query: 457 gcaatgcgcgctttacaaaacaa 479
|| |||||| | |||||||||||
Sbjct: 1009 gctatgcgctcattacaaaacaa 1031
Score = 73.8 bits (37), Expect = 4e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 11 atgcaattggaaacctgcttccggatgatgaagatgagcttttagctgggataatggatg 70
||||||| |||| | ||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct: 563 atgcaatcggaaccatgcttcctgatgatgaggaggagcttttagctggcataatggatg 622
Query: 71 atttt 75
|||||
Sbjct: 623 atttt 627