Miyakogusa Predicted Gene
- Lj6g3v0920600.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0920600.1 Non Chatacterized Hit- tr|A9PFQ8|A9PFQ8_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,69.64,9e-17,CYCLIC NUCLEOTIDE GATED CHANNEL,NULL; VOLTAGE
AND LIGAND GATED POTASSIUM CHANNEL,NULL,CUFF.58554.1
(462 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP052112 similar to UniRef100_A9CRE4 Cluster: Cyclic nu... 698 0.0
gnl|LJGI|TC78526 similar to UniRef100_A9CRE4 Cluster: Cyclic nuc... 511 e-144
gnl|LJGI|TC78200 similar to UniRef100_A9CRE4 Cluster: Cyclic nuc... 274 5e-73
gnl|LJGI|GO010489 similar to UniRef100_A7QJZ3 Cluster: Chromosom... 184 3e-46
gnl|LJGI|BP080087 homologue to UniRef100_A7QJZ5 Cluster: Chromos... 86 2e-16
>gnl|LJGI|BP052112 similar to UniRef100_A9CRE4 Cluster: Cyclic nucleotide gated
channel; n=1; Malus x domestica|Rep: Cyclic nucleotide
gated channel - Malus domestica (Apple) (Malus
sylvestris), partial (21%)
Length = 553
Score = 698 bits (352), Expect = 0.0
Identities = 363/367 (98%)
Strand = Plus / Minus
Query: 96 agagtatggaactagaatgccattatctgaaggggacgcttgtggtgaagaacttatgac 155
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agaggatggaactagaatgccattatctgaaggggacgcttgtggtgaagaacttatgac 425
Query: 156 atggtatcttgaacattcttctgtaagctcagatggtagaaaagtaaggcttcctggaca 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atggtatcttgaacattcttctgtaagctcagatggtagaaaagtaaggcttcctggaca 365
Query: 216 gaggttggttagcaacaggacagtaaattgcttgacaaatgtggaggcattttcactctc 275
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 364 gaggttggttagcaacaggacagtaaagtgcttgacaaatgtggaggcattttcactctc 305
Query: 276 tgccgccgaccttgaagaagtcacgatacttttcacaagattcttgcggcgccctcaggt 335
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 304 tgccgccgaccttgaagaagtcacgatacttttcacaagattcttgcggagccctcaggt 245
Query: 336 ccaaggagctttaaggtatgaatcgccttattggagatcccttgccgcaaaccgcattca 395
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 244 ccaaggagctttaaggtatgaatcgccttattggagatcccttgccgcnaaccgcattca 185
Query: 396 agttgcatggagatatagacagaaacgtctgagtcgtgttaattcctcagtaacaactaa 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agttgcatggagatatagacagaaacgtctgagtcgtgttaattcctcagtaacaactaa 125
Query: 456 acattga 462
|||||||
Sbjct: 124 acattga 118
>gnl|LJGI|TC78526 similar to UniRef100_A9CRE4 Cluster: Cyclic nucleotide gated
channel; n=1; Malus x domestica|Rep: Cyclic nucleotide
gated channel - Malus domestica (Apple) (Malus
sylvestris), partial (13%)
Length = 803
Score = 511 bits (258), Expect = e-144
Identities = 274/278 (98%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 186 agatggtagaaaagtaaggcttcctggacagaggttggttagcaacaggacagtaaattg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2 agatggtagaaaagtaaggcttcctggacagaggttggttagcaacaggacagtaaagtg 61
Query: 246 cttgacaaatgtggaggcattttcactctctgccgccgaccttgaagaagtcacgatact 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cttgacaaatgtggaggcattttcactctctgccgccgaccttgaagaagtcacgatact 121
Query: 306 tttcacaaga-ttcttgcggcgccctcaggtccaaggagctttaaggtatgaatcgcctt 364
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttcacaagacttcttgcggagccctcaggtccaaggagctttaaggtatgaatcgcctt 181
Query: 365 attggagatcccttgccgcaaaccgcattcaagttgcatggagatatagacagaaacgtc 424
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 actggagatcccttgccgcaaaccgcattcaagttgcatggagatatagacagaaacgtc 241
Query: 425 tgagtcgtgttaattcctcagtaacaactaaacattga 462
||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgagtcgtgttaattcctcagtaacaactaaacattga 279
>gnl|LJGI|TC78200 similar to UniRef100_A9CRE4 Cluster: Cyclic nucleotide gated
channel; n=1; Malus x domestica|Rep: Cyclic nucleotide
gated channel - Malus domestica (Apple) (Malus
sylvestris), partial (24%)
Length = 1320
Score = 274 bits (138), Expect = 5e-73
Identities = 213/238 (89%)
Strand = Plus / Plus
Query: 115 ccattatctgaaggggacgcttgtggtgaagaacttatgacatggtatcttgaacattct 174
|||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct: 140 ccattatcggaaggggatgcttgtggtgaagaacttctcacatggtatcttgaacattct 199
Query: 175 tctgtaagctcagatggtagaaaagtaaggcttcctggacagaggttggttagcaacagg 234
||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||
Sbjct: 200 tctgtaagcaaagatggtaaaaaagtaaggcttccaggacagaggttgcagagcaacaga 259
Query: 235 acagtaaattgcttgacaaatgtggaggcattttcactctctgccgccgaccttgaagaa 294
|||||||| ||||| ||||||||||||| |||||||||| ||| || || |||||||||
Sbjct: 260 acagtaaaatgcttaacaaatgtggagggattttcactccgtgctgcagatcttgaagaa 319
Query: 295 gtcacgatacttttcacaagattcttgcggcgccctcaggtccaaggagctttaaggt 352
|| || || ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 320 gtaacaattcttttcacaagattcttgcggagccctcaagtccaaggagctttaaggt 377
Score = 87.7 bits (44), Expect = 6e-17
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 349 aggtatgaatcgccttattggagatcccttgccgcaaaccgcattcaagttgcatggaga 408
|||||||| || ||||| |||||||||||||| |||||| | ||||| ||||||||||||
Sbjct: 686 aggtatgattcaccttactggagatcccttgcagcaaacagaattcaggttgcatggaga 745
Query: 409 tatagacagaaacgtctgagtcgtgttaattcctca 444
|| || |||||||||| ||||||| |||| |||||
Sbjct: 746 tacaggaagaaacgtctaagtcgtgctaatacctca 781
>gnl|LJGI|GO010489 similar to UniRef100_A7QJZ3 Cluster: Chromosome undetermined
scaffold_109, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_109,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (28%)
Length = 537
Score = 184 bits (93), Expect = 3e-46
Identities = 165/189 (87%)
Strand = Plus / Plus
Query: 256 gtggaggcattttcactctctgccgccgaccttgaagaagtcacgatacttttcacaaga 315
||||||| |||||||||| ||| || || ||||||||||| || || ||||||||||||
Sbjct: 2 gtggagggattttcactccgtgctgcagatcttgaagaagtaacaattcttttcacaaga 61
Query: 316 ttcttgcggcgccctcaggtccaaggagctttaaggtatgaatcgccttattggagatcc 375
||||||||| ||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 62 ttcttgcggagccctcaagtccaaggagctttaaggtatgattcaccttactggagatcc 121
Query: 376 cttgccgcaaaccgcattcaagttgcatggagatatagacagaaacgtctgagtcgtgtt 435
||||| |||||| | ||||| |||||||||||||| || |||||||||| ||||||| |
Sbjct: 122 cttgcagcaaacagaattcaggttgcatggagatacaggaagaaacgtctaagtcgtgct 181
Query: 436 aattcctca 444
||| |||||
Sbjct: 182 aatacctca 190
>gnl|LJGI|BP080087 homologue to UniRef100_A7QJZ5 Cluster: Chromosome undetermined
scaffold_109, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_109,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (5%)
Length = 382
Score = 85.7 bits (43), Expect = 2e-16
Identities = 46/47 (97%)
Strand = Plus / Minus
Query: 1 atgaagaaatggttatggagaatctaccagaagatctgcagagagac 47
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 279 atgaagaaatggttatggagaatctgccagaagatctgcagagagac 233