Miyakogusa Predicted Gene
- Lj6g3v0886400.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0886400.1 tr|G7J2D6|G7J2D6_MEDTR F-box/FBD/LRR-repeat
protein OS=Medicago truncatula GN=MTR_3g071850 PE=4
SV=1,36.79,3e-18,domain in FBox and BRCT domain containing pl,FBD;
FAMILY NOT NAMED,NULL; FBD,FBD,CUFF.58430.1
(606 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69553 weakly similar to UniRef100_Q8L7H1 Cluster: F-b... 333 7e-91
gnl|LJGI|FS343807 208 3e-53
gnl|LJGI|TC73575 similar to UniRef100_A7QK65 Cluster: Chromosome... 168 3e-41
gnl|LJGI|TC64591 weakly similar to UniRef100_Q2HUI7 Cluster: Cyc... 115 3e-25
gnl|LJGI|TC82244 78 7e-14
gnl|LJGI|FS330951 similar to UniRef100_A7QK65 Cluster: Chromosom... 68 7e-11
gnl|LJGI|TC68402 weakly similar to UniRef100_Q8LF09 Cluster: F-b... 58 7e-08
gnl|LJGI|TC69530 56 3e-07
gnl|LJGI|BP083641 UniRef100_A3N1N8 Cluster: Maltose transport sy... 54 1e-06
>gnl|LJGI|TC69553 weakly similar to UniRef100_Q8L7H1 Cluster: F-box/LRR-repeat protein
At4g14103; n=1; Arabidopsis thaliana|Rep:
F-box/LRR-repeat protein At4g14103 - Arabidopsis thaliana
(Mouse-ear cress), partial (13%)
Length = 1557
Score = 333 bits (168), Expect = 7e-91
Identities = 390/463 (84%), Gaps = 12/463 (2%)
Strand = Plus / Plus
Query: 146 atattcctgtgaaagcttttcgcaatgtacagtttctgaccttagacgagtgcgaagata 205
|||||||||||||||||||| ||||| |||||||||| |||| || |||| || |
Sbjct: 902 atattcctgtgaaagctttttccaatgcacagtttctgcacttaaacaagtgtgatg--- 958
Query: 206 cggacattcatgtatttcccaatttaattcatatggagttcttctttaactg---ctcta 262
| | ||||| ||||||||||||||||| | || ||||| ||| ||| || | ||||
Sbjct: 959 caggcattcctgtatttcccaatttaacttatctggagatctccttcaaacgacactctc 1018
Query: 263 ttaaatggagtgttgtgcttgatatgctcaatcactgtcctaagcttcaaactgttgtct 322
||||||||| | | |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1019 ttaaatggaatttggtgcttgatatgctcaatcattgtcctaagcttcaaacggttgtct 1078
Query: 323 ttgaactacagatttatgatgataatgatgaggtttggccagacccaggttttgttcctg 382
|||| ||| || ||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1079 ttgacatacgtcttgatgatga------tgaggtttggccagacccaggttttattccta 1132
Query: 383 aatgcttttcttcgcatcttaataaatgctatattaaaggttataccggagaggaatgtc 442
||||||||||| ||||||||| || |||| ||||||||||||| | |||| ||| ||||
Sbjct: 1133 aatgcttttctacgcatcttaggaagtgctttattaaaggttatgcaggagtggattgtc 1192
Query: 443 agatgagatttgtaagatatgttatgcaaaactcaacttcgttacgtaccatgatcattt 502
|||||||||||| |||||||||| |||||||| |||| | ||||||| || |||||||||
Sbjct: 1193 agatgagatttgcaagatatgttttgcaaaacgcaaccttgttacgttccctgatcattt 1252
Query: 503 gcagtcgctatgaccaaaatcatgagagaaggcttgaagtgattacagaattggcctcat 562
||||||| ||| |||||||||| |||||| ||||||| |||| ||||||||||||||||
Sbjct: 1253 gcagtcggtattcccaaaatcatcagagaaagcttgaaatgataacagaattggcctcat 1312
Query: 563 acacaaggagttctgcagtttgtgaacttttatttaagtgatt 605
| ||||||| |||||||||||||||||| |||||||||||||
Sbjct: 1313 atccaaggagctctgcagtttgtgaacttctatttaagtgatt 1355
>gnl|LJGI|FS343807
Length = 619
Score = 208 bits (105), Expect = 3e-53
Identities = 281/339 (82%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 263 ttaaatggagtgttgtgcttgatatgctcaatcactgtcctaagcttcaaactgttgtct 322
||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 104 ttaaatggagtgtggcgcttgatatgctcaatcattgccctaagcttcaaactgttgtct 163
Query: 323 ttgaactacagatttatgatgataatgatgaggtttggccagacccaggttttgttcctg 382
|||| || | || ||||| | | ||||| ||||||||||| ||||||||||||||||
Sbjct: 164 ttgattta---acttttgatggtgaagatgatgtttggccagatccaggttttgttcctg 220
Query: 383 aatgcttttcttcgcatcttaataaatgctatattaaaggttataccggagaggaatgtc 442
||||||||||||| ||||||| || |||| || || || | | ||| || ||||
Sbjct: 221 aatgcttttcttcacatcttaggaagtgcttccttgaaatttttgcaggactgggatgtg 280
Query: 443 agatgagatttgtaagatatgttatgcaaaactcaacttcgttacgtaccatgatcattt 502
||| |||||||| |||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 281 agaagagatttgcaagatatgttatgcaaaactcaaccttgttacgtaccatgaccattt 340
Query: 503 gcagtcgctatgaccaaaatcatgagagaaggcttgaagtgattacagaattggcctcat 562
| |||| || || ||||||| || || ||||||| | | |||||||| ||||||
Sbjct: 341 ccggtcgataccccccaaatcatccgaaaatgcttgaaattttaacagaattatcctcat 400
Query: 563 acacaaggagttctgcagtttgtgaacttttatttaagt 601
|| ||||||| ||||||||||||||||||||| ||||||
Sbjct: 401 acccaaggagctctgcagtttgtgaacttttaattaagt 439
>gnl|LJGI|TC73575 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 1447
Score = 168 bits (85), Expect = 3e-41
Identities = 254/310 (81%), Gaps = 9/310 (2%)
Strand = Plus / Plus
Query: 283 gatatgctcaatcactgtcctaagcttcaaactgttgtctttgaactacagatttatgat 342
|||||||||||||| || ||||||||||| |||||||||||||| | || ||||| |
Sbjct: 922 gatatgctcaatcattgccctaagcttcatactgttgtctttgattt---gacttatgtt 978
Query: 343 gataatgatgaggtttggccagacccaggttttgttcctgaatgcttttcttcgcatctt 402
||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 979 gataaatatgatgtttggccagacccaggttttgttcctgaatgctttcgttcacatctt 1038
Query: 403 aataaatgctatattaaaggttataccggagaggaatgtcagatgagatttgtaagatat 462
| || |||| | ||||||||| || ||| |||||||| | |||||||| ||| |||
Sbjct: 1039 aggaagtgctttcttaaaggttttagatgagtggaatgtccaaggagatttgcaaggtat 1098
Query: 463 gttatgcaaaactcaacttcgttacgtaccatgatcatttgcagtcgctatgaccaaaat 522
||||||| ||||||| | |||||||||||||||| ||||||| || | ||||
Sbjct: 1099 gttatgccaaactcagcgtcgttacgtaccatgaaattttgcag------tgggccaaat 1152
Query: 523 catgagagaaggcttgaagtgattacagaattggcctcatacacaaggagttctgcagtt 582
||| ||||| ||||||| |||| |||||||| |||| ||| ||||||| |||||||||
Sbjct: 1153 catcggagaacgcttgaaatgatgacagaattaacctcgtacccaaggagctctgcagtt 1212
Query: 583 tgtgaacttt 592
||||||||||
Sbjct: 1213 tgtgaacttt 1222
Score = 75.8 bits (38), Expect = 3e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 147 tattcctgtgaaagcttttcgcaatgtacagtttctgaccttagac 192
|||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 702 tattcctgtggaagctttttgcaatgtacagtttctgaccttagac 747
>gnl|LJGI|TC64591 weakly similar to UniRef100_Q2HUI7 Cluster: Cyclin-like F-box; FBD;
Zinc finger, FYVE/PHD-type; n=1; Medicago truncatula|Rep:
Cyclin-like F-box; FBD; Zinc finger, FYVE/PHD-type -
Medicago truncatula (Barrel medic), partial (19%)
Length = 1534
Score = 115 bits (58), Expect = 3e-25
Identities = 230/287 (80%), Gaps = 9/287 (3%)
Strand = Plus / Plus
Query: 210 cattcatgtatttcccaatttaattcatatggagttcttctttaactgctctattaaatg 269
||||| ||| |||||||||||||||||||||||| || |||| ||||||| || |
Sbjct: 986 cattcctgtgtttcccaatttaattcatatggagctcagctttggaggctctataaatgg 1045
Query: 270 gagtgttgtgcttgatatgctcaatcactgtcctaagcttcaaactgttgtctttgaact 329
|||||| | ||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 1046 gagtgtggcgcttgatatgctcaatcactgccctaagcttcagacttttgtctttgaact 1105
Query: 330 acagatttatgatgataatgatgaggtttggccagacccaggttttgttcctgaatgctt 389
| | | ||||||| | | |||||| | ||||| ||| |||||| |||||||
Sbjct: 1106 a---actgatgatgaca------acttttggctatacccacctttggttcctaaatgctt 1156
Query: 390 ttcttcgcatcttaataaatgctatattaaaggttataccggagaggaatgtcagatgag 449
|||||| ||||||| |||||| | ||| | | ||| ||| || |||| |||||||
Sbjct: 1157 ttcttcacatcttaggaaatgccttcttacaaaatttacaggattgggatgtgagatgag 1216
Query: 450 atttgtaagatatgttatgcaaaactcaacttcgttacgtaccatga 496
||||| ||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1217 atttgcaaggtatgttatgcaaaactcaacatccttacgtaccatga 1263
>gnl|LJGI|TC82244
Length = 527
Score = 77.8 bits (39), Expect = 7e-14
Identities = 132/163 (80%)
Strand = Plus / Plus
Query: 435 ggaatgtcagatgagatttgtaagatatgttatgcaaaactcaacttcgttacgtaccat 494
||||||||| |||||||||| ||| |||||||||||||||||||| ||| ||||||| |
Sbjct: 173 ggaatgtcatatgagatttgcaaggtatgttatgcaaaactcaacatcgctacgtactct 232
Query: 495 gatcatttgcagtcgctatgaccaaaatcatgagagaaggcttgaagtgattacagaatt 554
|| ||||||||| | | | ||| || || || |||| || |||| ||||||||
Sbjct: 233 gacaatttgcagtaagaagtatcttaattatcaggaaaagcttcaaatgataacagaatt 292
Query: 555 ggcctcatacacaaggagttctgcagtttgtgaacttttattt 597
|| |||||| ||||||| |||||| |||||||||||||||||
Sbjct: 293 agcatcatacccaaggagctctgcaatttgtgaacttttattt 335
>gnl|LJGI|FS330951 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 812
Score = 67.9 bits (34), Expect = 7e-11
Identities = 102/124 (82%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 145 tatattcctgtgaaagcttttcgcaatgtacagtttctgaccttagacgagtgcgaagat 204
||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||| |
Sbjct: 672 tatattcctgtcaaagctttttcaaatgtgcagtttctgctcttagacgagtgcgatg-- 729
Query: 205 acggacattcatgtatttcccaatttaattcatatggagttcttctttaactgctctatt 264
|||| |||| ||| ||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 730 -cggatattcctgtgtttcccaatttaatttatttggagctcttatttggaggctctatt 788
Query: 265 aaat 268
||||
Sbjct: 789 aaat 792
>gnl|LJGI|TC68402 weakly similar to UniRef100_Q8LF09 Cluster: F-box/FBD/LRR-repeat
protein At4g00160; n=2; Arabidopsis thaliana|Rep:
F-box/FBD/LRR-repeat protein At4g00160 - Arabidopsis
thaliana (Mouse-ear cress), partial (13%)
Length = 773
Score = 58.0 bits (29), Expect = 7e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1 atggaccttcttgatgggtgttcagctcttgaagatttggaaata 45
|||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 551 atggaccttctttatgggtgtccagtacttgaagatttggaaata 595
>gnl|LJGI|TC69530
Length = 553
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 208 gacattcatgtatttcccaatttaattcatatggag 243
||||||| | ||||||||||||||||||||||||||
Sbjct: 86 gacattcctatatttcccaatttaattcatatggag 121
>gnl|LJGI|BP083641 UniRef100_A3N1N8 Cluster: Maltose transport system permease protein
MalF; n=1; Actinobacillus pleuropneumoniae L20|, partial
(2%)
Length = 336
Score = 54.0 bits (27), Expect = 1e-06
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 549 agaattggcctcatacacaaggagttctgcagtttgtgaacttttatttaa 599
||||||| |||||| | |||| ||||||||| | |||||||||||||||||
Sbjct: 285 agaattgtcctcatgcccaagaagttctgcaatatgtgaacttttatttaa 235