Miyakogusa Predicted Gene
- Lj6g3v0872240.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0872240.2 Non Chatacterized Hit- tr|Q4W8V2|Q4W8V2_MOUSE
Putative uncharacterized protein OS=Mus musculus
GN=St,29.11,1e-18,Helical region found in SNAREs,Target SNARE
coiled-coil domain; seg,NULL; t-snare proteins,t-SNARE; ,CUFF.58421.2
(741 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57933 similar to UniRef100_Q946Y7 Cluster: Syntaxin-6... 1388 0.0
gnl|LJGI|DC594325 similar to UniRef100_Q946Y7 Cluster: Syntaxin-... 327 6e-89
>gnl|LJGI|TC57933 similar to UniRef100_Q946Y7 Cluster: Syntaxin-61; n=1; Arabidopsis
thaliana|Rep: Syntaxin-61 - Arabidopsis thaliana
(Mouse-ear cress), partial (77%)
Length = 1278
Score = 1388 bits (700), Expect = 0.0
Identities = 732/745 (98%), Gaps = 4/745 (0%)
Strand = Plus / Plus
Query: 1 atgccctcagctcaggatccattctacgttgtcaaggccgagattcaagaatctattgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 atgccctcagctcaggatccattctacgttgtcaaggccgagattcaagaatctattgac 146
Query: 61 aagttgcaatctgtatttcgccaatgggaacgcgctcctgatgctgtggagcgaggacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aagttgcaatctgtatttcgccaatgggaacgcgctcctgatgctgtggagcgaggacat 206
Query: 121 cttacaaaggaggttcttgcgggatgtgggagcatagaatggcag----gtggatgaatt 176
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 207 cttacaaaggaggttcttgcgggatgtgggagcatagaatggcagaaaggtggatgaatt 266
Query: 177 ggacaaagcaattgctgttgcatctaaagaaccttcttggtatggcattggtgaagtgga 236
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 ggacaaagcaattgctgttgcatctaaagaaccttcttggtatggcattgatgaagtgga 326
Query: 237 gattgaaaaccggaggagatggacaagcagtgctcgtactcaggttggcgcagtgaagaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gattgaaaaccggaggagatggacaagcagtgctcgtactcaggttggcgcagtgaagaa 386
Query: 297 aacagtggaaggtggaaagggatcaagtacaacaagccatcaaagtgttagagggatgca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aacagtggaaggtggaaagggatcaagtacaacaagccatcaaagtgttagagggatgca 446
Query: 357 ccaagaattaatgaggctaccgaattcccatcaaactaatacatccaaccattatgctgc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccaagaattaatgaggctaccgaattcccatcaaactaatacatccaaccattatgctgc 506
Query: 417 cgaagatgatgatttcatacaatcagaatcagataggcagatgcttcttataaagagaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cgaagatgatgatttcatacaatcagaatcagataggcagatgcttcttataaagagaca 566
Query: 477 ggatgaggagttggatgagcttagttcaagtgtgcaaagaattggaggtgttggacttac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggatgaggagttggatgagcttagttcaagtgtgcaaagaattggaggtgttggacttac 626
Query: 537 aatacatgatgaactcatcgcacaggaaaggattgtagatgaacttggtaatgagatgga 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aatacatgatgaactcatcgcacaggaaaggattgtagatgaacttggtaatgagatgga 686
Query: 597 cagcacaacaaatcgtctagatttcgtccnnnnnnnngtggcaatggtcatgaagaaggc 656
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 687 cagcacaacaaatcgtctagatttcgtccaaaaaaaagtggcaatggtcatgaagaaggc 746
Query: 657 tagtgcaaagggccagctcatgatgatattgggtttgttggccctgtttattttcctctt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tagtgcaaagggccagctcatgatgatattgggtttgttggccctgtttattttcctctt 806
Query: 717 tatcttggtgttcttcacctagtca 741
|||||||||||||||||||||||||
Sbjct: 807 tatcttggtgttcttcacctagtca 831
>gnl|LJGI|DC594325 similar to UniRef100_Q946Y7 Cluster: Syntaxin-61; n=1; Arabidopsis
thaliana|Rep: Syntaxin-61 - Arabidopsis thaliana
(Mouse-ear cress), partial (34%)
Length = 584
Score = 327 bits (165), Expect = 6e-89
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 1 atgccctcagctcaggatccattctacgttgtcaaggccgagattcaagaatctattgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 atgccctcagctcaggatccattctacgttgtcaaggccgagattcaagaatctattgac 126
Query: 61 aagttgcaatctgtatttcgccaatgggaacgcgctcctgatgctgtggagcgaggacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aagttgcaatctgtatttcgccaatgggaacgcgctcctgatgctgtggagcgaggacat 186
Query: 121 cttacaaaggaggttcttgcgggatgtgggagcatagaatggcag 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cttacaaaggaggttcttgcgggatgtgggagcatagaatggcag 231
Score = 283 bits (143), Expect = 8e-76
Identities = 173/185 (93%), Gaps = 11/185 (5%)
Strand = Plus / Plus
Query: 164 aggtggatgaattggacaaagcaattgctgttgcatctaaagaaccttcttggtatggca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aggtggatgaattggacaaagcaattgctgttgcatctaaagaaccttcttggtatggca 459
Query: 224 ttggtgaagtggagattgaaaaccggaggagatggacaagcagtgctcgtactcag---- 279
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttgatgaagtggagattgaaaaccggaggagatggacaagcagtgctcgtactcaggtat 519
Query: 280 -------gttggcgcagtgaagaaaacagtggaaggtggaaagggatcaagtacaacaag 332
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccaaaatgttggcgcagtgaagaaaacagtggaaggtggaaagggatcaagtacaacaag 579
Query: 333 ccatc 337
|||||
Sbjct: 580 ccatc 584