Miyakogusa Predicted Gene
- Lj6g3v0857780.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0857780.1 tr|F2CYT4|F2CYT4_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,51.65,3e-18,BROMODOMAIN
CONTAINING 7,NULL; BROMODOMAIN CONTAINING PROTEIN,NULL; no
description,Bromodomain; BROM,CUFF.58415.1
(2586 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP038570 similar to UniRef100_A7P0P0 Cluster: Chromosom... 1122 0.0
gnl|LJGI|BW600546 similar to UniRef100_Q92SW4 Cluster: Translati... 793 0.0
gnl|LJGI|TC73063 similar to UniRef100_A7P0P0 Cluster: Chromosome... 428 e-119
gnl|LJGI|TC74231 similar to UniRef100_A7P0P0 Cluster: Chromosome... 289 4e-77
gnl|LJGI|TC73028 similar to UniRef100_A7QPC5 Cluster: Chromosome... 113 6e-24
gnl|LJGI|GO021708 weakly similar to UniRef100_A7P0P0 Cluster: Ch... 76 1e-12
>gnl|LJGI|BP038570 similar to UniRef100_A7P0P0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 566
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 815 tggttaagaagctagtaaagaagccactgggttgtgcttcacaggaacctgttggctctg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggttaagaagctagtaaagaagccactgggttgtgcttcacaggaacctgttggctctg 60
Query: 875 atttctcctcaggggccactcttgcgactattggagatgtgcagccaatttttcatccaa 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttctcctcaggggccactcttgcgactattggagatgtgcagccaatttttcatccaa 120
Query: 935 tgcaacatgttagctatgggaggtctggcaactttgatggtatcatagaggggaatactt 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcaacatgttagctatgggaggtctggcaactttgatggtatcatagaggggaatactt 180
Query: 995 tcttcatcgatgcaaatcaagagaaagctgaggacgttttgtcagggaagggcctgctct 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcttcatcgatgcaaatcaagagaaagctgaggacgttttgtcagggaagggcctgctct 240
Query: 1055 ctaaattgggaaggaagtcctttgtgcttgatgacaatcgtcgtgcatcttataatatgt 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctaaattgggaaggaagtcctttgtgcttgatgacaatcgtcgtgcatcttataatatgt 300
Query: 1115 ctatgcaaccaattactagatcagattcagtatttatgtcctttgagagtggaatgaagc 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctatgcaaccaattactagatcagattcagtatttatgtcctttgagagtggaatgaagc 360
Query: 1175 agctggttactgttgggcttcatgccgaatattcttatgctaggagtttggctcgtttta 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agctggttactgttgggcttcatgccgaatattcttatgctaggagtttggctcgtttta 420
Query: 1235 gtgcttctctaggacccattgcttggaaaattgcttcccacaggattcaacaggtactgc 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtgcttctctaggacccattgcttggaaaattgcttcccacaggattcaacaggtactgc 480
Query: 1295 cagctggctctaaatttggtcgtggctgggttggagagtttgaacagcttccaaccccaa 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagctggctctaaatttggtcgtggctgggttggagagtttgaacagcttccaaccccaa 540
Query: 1355 attttgtgcaccataatgataatgat 1380
||||||||||||||||||||||||||
Sbjct: 541 attttgtgcaccataatgataatgat 566
>gnl|LJGI|BW600546 similar to UniRef100_Q92SW4 Cluster: Translation initiation factor
IF-2; n=1; Sinorhizobium meliloti|Rep: Translation
initiation factor IF-2 - Rhizobium meliloti
(Sinorhizobium meliloti), partial (3%)
Length = 436
Score = 793 bits (400), Expect = 0.0
Identities = 400/400 (100%)
Strand = Plus / Plus
Query: 1 atggttcagatcgcgaggaggaagaagggacggccgtcgaaggcggatctggccgcccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 atggttcagatcgcgaggaggaagaagggacggccgtcgaaggcggatctggccgcccgt 96
Query: 61 cgcgccgctcagtcaccggaaaccgcggaggagcagcatgacatccgtcggagcctccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 cgcgccgctcagtcaccggaaaccgcggaggagcagcatgacatccgtcggagcctccgc 156
Query: 121 cgccggaacgtcaggtacaacatcatcgactacgatgacgattacgtcgacgaggaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cgccggaacgtcaggtacaacatcatcgactacgatgacgattacgtcgacgaggaggac 216
Query: 181 gagaggaggcgcgagaagaagaagctcaagctaatggccaagctgaaccagggcgaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gagaggaggcgcgagaagaagaagctcaagctaatggccaagctgaaccagggcgaagat 276
Query: 241 gaagaagaaggaggggagtgggaggcgcgtgaggatcactcgccagaggaggaacaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaagaagaaggaggggagtgggaggcgcgtgaggatcactcgccagaggaggaacaacag 336
Query: 301 aacggcggcgaattcgatgtggaagagaaacataaagaaacagaagcggaagacagtgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aacggcggcgaattcgatgtggaagagaaacataaagaaacagaagcggaagacagtgtg 396
Query: 361 gtaaagggtagaaaagtggatttgaaagggctccactctg 400
||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtaaagggtagaaaagtggatttgaaagggctccactctg 436
>gnl|LJGI|TC73063 similar to UniRef100_A7P0P0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 707
Score = 428 bits (216), Expect = e-119
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 2371 cagtttccaaaccaacaaatggtttcccctaaattagcatctgctgaccaaactaggttt 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtttccaaaccaacaaatggtttcccctaaattagcatctgctgaccaaactaggttt 60
Query: 2431 caaatgcagtccccttggcgaggtctgagtcctcaaggccagcaggcccagcagaaacaa 2490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaatgcagtccccttggcgaggtctgagtcctcaaggccagcaggcccagcagaaacaa 120
Query: 2491 gaaacccttccgcctgatttgaatattggttgtcagtctccagggtcacctgggaaacaa 2550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaacccttccgcctgatttgaatattggttgtcagtctccagggtcacctgggaaacaa 180
Query: 2551 tcacagcaaccggacctagctttgcaactatgaaat 2586
||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcacagcaaccggacctagctttgcaactatgaaat 216
>gnl|LJGI|TC74231 similar to UniRef100_A7P0P0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 750
Score = 289 bits (146), Expect = 4e-77
Identities = 149/150 (99%)
Strand = Plus / Plus
Query: 2437 cagtccccttggcgaggtctgagtcctcaaggccagcaggcccagcagaaacaagaaacc 2496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 cagtccccttggcgaggtctgagtcctcaaggccagcaggcccagcagaaacaagaaacc 128
Query: 2497 cttccgcctgatttgaatattggttgtcagtctccagggtcacctgggaaacaatcacag 2556
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 129 cttccgcctgatttgaatattggctgtcagtctccagggtcacctgggaaacaatcacag 188
Query: 2557 caaccggacctagctttgcaactatgaaat 2586
||||||||||||||||||||||||||||||
Sbjct: 189 caaccggacctagctttgcaactatgaaat 218
Score = 141 bits (71), Expect = 2e-32
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2289 tggaatgtctgtccagtatgataagaacaacttcccatttcaagcctttgtacctcaacc 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaatgtctgtccagtatgataagaacaacttcccatttcaagcctttgtacctcaacc 60
Query: 2349 tattcaaccag 2359
|||||||||||
Sbjct: 61 tattcaaccag 71
>gnl|LJGI|TC73028 similar to UniRef100_A7QPC5 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 735
Score = 113 bits (57), Expect = 6e-24
Identities = 158/192 (82%), Gaps = 6/192 (3%)
Strand = Plus / Plus
Query: 360 ggtaaagggtagaaaagtggatttgaaagggctccactctgtttctgtttcaggagctcc 419
||||||||| ||||||||||||| |||||||||||||||| ||| |||| ||||
Sbjct: 548 ggtaaagggcagaaaagtggattctaaagggctccactctggttc------aggaactcc 601
Query: 420 tgcaaatactgcatctgggattccattgcctgatcagaagactctggaattgattcttga 479
| | || ||| | || ||||||||| |||||| ||| ||| ||||||||||| |||||
Sbjct: 602 ttcgaaggttgcttatgtgattccattacctgataagaggaccctggaattgatccttga 661
Query: 480 caagcttcagaagaaggacaggtatagcgtatttgcagagccggttgatccggaagagct 539
||| |||||||||||||||| ||| |||| | ||| ||||| |||||||| ||||||||
Sbjct: 662 caaacttcagaagaaggacacatatggcgtgtatgcggagccagttgatccagaagagct 721
Query: 540 tcctgattatca 551
|||||||||||
Sbjct: 722 ccctgattatca 733
>gnl|LJGI|GO021708 weakly similar to UniRef100_A7P0P0 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 688
Score = 75.8 bits (38), Expect = 1e-12
Identities = 113/138 (81%)
Strand = Plus / Plus
Query: 1910 gtccatcatctgaaactatatcaagccaaacaggaagagctactcgtttttctgttcatg 1969
|||||||||| |||| || ||||||||||||||| |||||| ||| ||| ||| ||||
Sbjct: 27 gtccatcatcggaaagtacatcaagccaaacaggcagagctgctctctttgctgcccatg 86
Query: 1970 ggcaggaccagggtctcagtaacccagtccagtcgatgagaatgttcactgaaaaggctc 2029
|||| || ||| |||||| | || || ||| |||||| ||||| ||||||||||||
Sbjct: 87 ggcaagagcagactctcagcgatccggttcagctgatgaggatgttagctgaaaaggctc 146
Query: 2030 aaaagcagcagacttcta 2047
||||||| ||||||||||
Sbjct: 147 aaaagcaacagacttcta 164
Score = 67.9 bits (34), Expect = 3e-10
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 2170 aaacaagaacctgaccattctagttcacccaagaatcagatttctgcagattctttgaaa 2229
||||||| ||||||| |||||||||| |||||||| |||| |||||||||||| ||| |
Sbjct: 296 aaacaaggacctgacaattctagttctcccaagaaccagaattctgcagattcattgtat 355
Query: 2230 aaccaaactagggagttccatcagca 2255
|||| || | ||||||||||||||
Sbjct: 356 aacccggctcgagagttccatcagca 381