Miyakogusa Predicted Gene

Lj6g3v0820200.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0820200.1 Non Chatacterized Hit- tr|C6TJB4|C6TJB4_SOYBN
Putative uncharacterized protein OS=Glycine max PE=4
S,93.88,2e-18,SWIB,SWIB/MDM2 domain; SUBFAMILY NOT NAMED,NULL; BRG-1
ASSOCIATED FACTOR 60 (BAF60),NULL; SWIB/MDM2 ,CUFF.58365.1
         (303 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82278 similar to UniRef100_Q1PCH7 Cluster: SWIb domai...   579   e-165

>gnl|LJGI|TC82278 similar to UniRef100_Q1PCH7 Cluster: SWIb domain-containing
           protein; n=1; Solanum chacoense|Rep: SWIb
           domain-containing protein - Solanum chacoense (Chaco
           potato), partial (97%)
          Length = 817

 Score =  579 bits (292), Expect = e-165
 Identities = 303/306 (99%), Gaps = 3/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttcctcagcgcatgaagaaagcaatcactgataatccgaagaagcttgccaacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36  atgcttcctcagcgcatgaagaaagcaatcactgataatccgaagaagcttgccaacttg 95

                                                                       
Query: 61  attgacctagtgaaccttccatccacgctcagagacttcgtgggtcaatctcagatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  attgacctagtgaaccttccatccacgctcagagacttcgtgggtcaatctcagatttct 155

                                                                       
Query: 121 cgtttgggttgtttcatgcgcgtttggtcctacatcaaaaccaacaatctc---caggat 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 156 cgtttgggttgtttcatgcgcgtttggtcctacatcaaaaccaacaatctccagcaggat 215

                                                                       
Query: 178 ccaaacaacaagaatgtggtcaactgtgatgagaagttgaagagtattttgttggggaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ccaaacaacaagaatgtggtcaactgtgatgagaagttgaagagtattttgttggggaaa 275

                                                                       
Query: 238 cctcaggttgagttagcagaacttccttcacttatcaagcttcattttccaaaagagtcc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cctcaggttgagttagcagaacttccttcacttatcaagcttcattttccaaaagagtcc 335

                 
Query: 298 aagtga 303
           ||||||
Sbjct: 336 aagtga 341