Miyakogusa Predicted Gene
- Lj6g3v0820190.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0820190.1 tr|I1N0J3|I1N0J3_SOYBN GrpE protein homolog
OS=Glycine max GN=Gma.3177 PE=3 SV=1,74.06,0,seg,NULL; no
description,GrpE nucleotide exchange factor, coiled-coil; no
description,GrpE nucleotid,CUFF.58367.1
(855 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62155 similar to UniRef100_Q9SZ18 Cluster: GrpE like ... 1687 0.0
gnl|LJGI|FS322425 similar to UniRef100_A7P0J9 Cluster: Chromosom... 242 3e-63
gnl|LJGI|BP062088 similar to UniRef100_A7P0J9 Cluster: Chromosom... 165 6e-40
gnl|LJGI|AV774532 similar to UniRef100_Q96515 Cluster: AR192; n=... 153 2e-36
>gnl|LJGI|TC62155 similar to UniRef100_Q9SZ18 Cluster: GrpE like protein; n=1;
Arabidopsis thaliana|Rep: GrpE like protein - Arabidopsis
thaliana (Mouse-ear cress), partial (59%)
Length = 1321
Score = 1687 bits (851), Expect = 0.0
Identities = 854/855 (99%)
Strand = Plus / Plus
Query: 1 atgcttagggtcttgtctcgtgcctccagaagcttcatgcttctctctgcttctcacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atgcttagggtcttgtctcgtgcctccagaagcttcatgcttctctctgcttctcacaaa 216
Query: 61 ccccaacctttttccacccccttctcctcgcatcacttccattccatcgttcatcaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ccccaacctttttccacccccttctcctcgcatcacttccattccatcgttcatcaatca 276
Query: 121 cccaacaagctgattccacttcaagtcaatctgttgaaccgatccatgaattcatccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cccaacaagctgattccacttcaagtcaatctgttgaaccgatccatgaattcatccttg 336
Query: 181 actccaatttttggattttcttcgtcggcctcgcctgaaccggaaagtcagaatgaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actccaatttttggattttcttcgtcggcctcgcctgaaccggaaagtcagaatgaacaa 396
Query: 241 gataaagctgctgctgatcaaaccaaagaaccagatgcagagccagagagtgaatgtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gataaagctgctgctgatcaaaccaaagaaccagatgcagagccagagagtgaatgtgat 456
Query: 301 aatctatccagggatgatttaataaagcttgttgctgagaaggaagaacttttgaagtcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatctatccagggatgatttaataaagcttgttgctgagaaggaagaacttttgaagtcg 516
Query: 361 aagcaggaagacattgtggaaatgaaggataaggttatgcgttcttatgctgagatggag 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 517 aagcaggaagacattgtggaaatgaagggtaaggttatgcgttcttatgctgagatggag 576
Query: 421 aatgttctgagcaggacaagacgcgatgcagagaattcgaaaaaatttgctatacagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aatgttctgagcaggacaagacgcgatgcagagaattcgaaaaaatttgctatacagaat 636
Query: 481 tttgcgaagggtttactagatgttgctgacaatttgggaagagcttcctcagttgtaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tttgcgaagggtttactagatgttgctgacaatttgggaagagcttcctcagttgtaaag 696
Query: 541 gatagtttttcaaaaattgaatcacctaatgactctgttgaagcagcaaaactcctgaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gatagtttttcaaaaattgaatcacctaatgactctgttgaagcagcaaaactcctgaaa 756
Query: 601 acacttctggaaggtgttgaaatgaccgagaaacaacttgcagaggtacttaaaaagcat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 acacttctggaaggtgttgaaatgaccgagaaacaacttgcagaggtacttaaaaagcat 816
Query: 661 ggtgttgaaaaatatgatcctacaaatgaaccatttgatccaaacaggcataatgccatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggtgttgaaaaatatgatcctacaaatgaaccatttgatccaaacaggcataatgccatc 876
Query: 721 ttccaaatacctgatgcttccaagcccccaggcactgttggagttgttttgaaggcagga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ttccaaatacctgatgcttccaagcccccaggcactgttggagttgttttgaaggcagga 936
Query: 781 tatatgctttatgatcgcgttcttcgtccagctgaagttggtgtgacgcaagaagtggag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 tatatgctttatgatcgcgttcttcgtccagctgaagttggtgtgacgcaagaagtggag 996
Query: 841 gacaataacagctga 855
|||||||||||||||
Sbjct: 997 gacaataacagctga 1011
>gnl|LJGI|FS322425 similar to UniRef100_A7P0J9 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (35%)
Length = 766
Score = 242 bits (122), Expect = 3e-63
Identities = 265/312 (84%), Gaps = 3/312 (0%)
Strand = Plus / Plus
Query: 284 cagagagtgaatgtgataatctatccagggatgatttaataaagcttgttgctgagaagg 343
||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||
Sbjct: 458 cagagagtgaatgtgat---ctttccagggaagatttaattaagcttgtgtctgagaagg 514
Query: 344 aagaacttttgaagtcgaagcaggaagacattgtggaaatgaaggataaggttatgcgtt 403
||||||||||||||| ||||| |||| |||| | ||||| | ||||| ||| |||||
Sbjct: 515 aagaacttttgaagttaaagcacaaagatattgagaaaatgcacgataaagttctgcgta 574
Query: 404 cttatgctgagatggagaatgttctgagcaggacaagacgcgatgcagagaattcgaaaa 463
||||||| |||||||||||| | | |||||| ||||| || ||||||||||| ||||
Sbjct: 575 cttatgcagagatggagaatatcaaggacaggactagacgtgaagcagagaattcaaaaa 634
Query: 464 aatttgctatacagaattttgcgaagggtttactagatgttgctgacaatttgggaagag 523
|||||||||||||||||||||| ||| | |||||||||||||| || |||||||||||||
Sbjct: 635 aatttgctatacagaattttgcaaagagcttactagatgttgcggataatttgggaagag 694
Query: 524 cttcctcagttgtaaaggatagtttttcaaaaattgaatcacctaatgactctgttgaag 583
|||| ||||||||||| || ||||||||||||||||| || | | |||||||| |||||
Sbjct: 695 cttcatcagttgtaaaagaaagtttttcaaaaattgattcgtcgagtgactctgctgaag 754
Query: 584 cagcaaaactcc 595
| | ||||||||
Sbjct: 755 cggtaaaactcc 766
>gnl|LJGI|BP062088 similar to UniRef100_A7P0J9 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 475
Score = 165 bits (83), Expect = 6e-40
Identities = 127/142 (89%)
Strand = Plus / Minus
Query: 691 ccatttgatccaaacaggcataatgccatcttccaaatacctgatgcttccaagccccca 750
|||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct: 474 ccatttgatccacataggcataatgccatcttccaaatccctgatggttccaagcctcca 415
Query: 751 ggcactgttggagttgttttgaaggcaggatatatgctttatgatcgcgttcttcgtcca 810
|||||||||| || |||| ||||| |||||||| ||||| ||||||| ||| ||||||||
Sbjct: 414 ggcactgttgcagctgttctgaagncaggatatgtgcttcatgatcgtgttattcgtcca 355
Query: 811 gctgaagttggtgtgacgcaag 832
|| |||||||||||||| ||||
Sbjct: 354 gcagaagttggtgtgactcaag 333
>gnl|LJGI|AV774532 similar to UniRef100_Q96515 Cluster: AR192; n=1; Arabidopsis
thaliana|Rep: AR192 - Arabidopsis thaliana (Mouse-ear
cress), partial (11%)
Length = 511
Score = 153 bits (77), Expect = 2e-36
Identities = 106/113 (93%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 686 atgaaccatttgatccaaacaggcataatgccatcttccaaatacctgatgcttccaagc 745
|||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct: 508 atgaaccatttgatcctgaccggcataatgccatcttcctaatacctgatgcttccaagc 449
Query: 746 ccccaggcactgttggagttgttttgaaggc-aggatatatg-ctttatgatc 796
|||||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 448 ccccaggccctgttggagttgttttgaaggcnaggatatatgactttatgatc 396