Miyakogusa Predicted Gene
- Lj6g3v0802280.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0802280.2 Non Chatacterized Hit- tr|G7IP97|G7IP97_MEDTR
RNA-binding protein, putative OS=Medicago truncatula
G,39.24,0.00000000007,RRM_1,RNA recognition motif domain; seg,NULL;
RNA recognition motif,RNA recognition motif domain; SU,CUFF.58296.2
(978 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62255 similar to UniRef100_A7R1X0 Cluster: Chromosome... 297 7e-80
gnl|LJGI|TC64666 similar to UniRef100_A7R1X0 Cluster: Chromosome... 281 4e-75
gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome... 159 4e-38
gnl|LJGI|TC73957 weakly similar to UniRef100_A7Q348 Cluster: Chr... 141 9e-33
gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosom... 129 4e-29
gnl|LJGI|TC81664 weakly similar to UniRef100_A7P0F4 Cluster: Chr... 62 7e-09
>gnl|LJGI|TC62255 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (23%)
Length = 791
Score = 297 bits (150), Expect = 7e-80
Identities = 289/334 (86%), Gaps = 1/334 (0%)
Strand = Plus / Plus
Query: 1 atggaatcagatcttggcaagctcttcattggaggaatatcttgggacactaatgaggaa 60
|||||||| ||||||||||||||||||||||| ||||| || ||||| ||| ||||||||
Sbjct: 430 atggaatcggatcttggcaagctcttcattgggggaatttcctgggatactgatgaggaa 489
Query: 61 catcttaaagaatattttggcaagtatggggaggtgatagaggttgtgatcatgagagat 120
| ||| |||||| ||||||| || ||||||||||||||||||| |||||||||| |||||
Sbjct: 490 cgtctcaaagaacattttgggaaatatggggaggtgatagaggctgtgatcatgcgagat 549
Query: 121 cgcttaacaggtcgtgctcgtggtttcggtttcgttgtctttgctgattctgctgttgca 180
||| ||||| |||||||| || |||||||| ||||| ||||||||| |||||||||||
Sbjct: 550 cgcaccacaggccgtgctcgaggcttcggttttgttgtttttgctgatcctgctgttgca 609
Query: 181 gaaagagtcattatggataagcacataattgatggccgcacagttgaagcaaagaaagct 240
||| |||||||| ||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 610 gaacgagtcattgtggataagcacataattgatggccgaacggttgaagccaagaaggct 669
Query: 241 gttcctagggatgatcagcagaatgtcaatagacagtcaggtagtgcacgtggatctcct 300
|||||| ||||||||||| | | | || |||||||| ||||| | | ||||||||||
Sbjct: 670 gttcctcgggatgatcagaacaccttaaacagacagtccggtagcgtccatggatctcct 729
Query: 301 ggtcctggacgtacaaaaaagatttttgttggag 334
||||| ||||| || || ||||||||||||||||
Sbjct: 730 ggtcccggacgcac-aagaagatttttgttggag 762
>gnl|LJGI|TC64666 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (23%)
Length = 753
Score = 281 bits (142), Expect = 4e-75
Identities = 229/258 (88%)
Strand = Plus / Plus
Query: 1 atggaatcagatcttggcaagctcttcattggaggaatatcttgggacactaatgaggaa 60
|||||||| ||||||||||||||||||||||| ||||| || ||||| ||| ||||||||
Sbjct: 437 atggaatcggatcttggcaagctcttcattgggggaatttcctgggatactgatgaggaa 496
Query: 61 catcttaaagaatattttggcaagtatggggaggtgatagaggttgtgatcatgagagat 120
| ||| |||||| ||||||| || ||||||||||||||||||| |||||||||| |||||
Sbjct: 497 cgtctcaaagaacattttgggaaatatggggaggtgatagaggctgtgatcatgcgagat 556
Query: 121 cgcttaacaggtcgtgctcgtggtttcggtttcgttgtctttgctgattctgctgttgca 180
||| ||||| |||||||| || |||||||| ||||||||||||||| ||||||||||
Sbjct: 557 cgcgccacaggccgtgctcgaggcttcggttttgttgtctttgctgatcctgctgttgct 616
Query: 181 gaaagagtcattatggataagcacataattgatggccgcacagttgaagcaaagaaagct 240
|| ||||||||| ||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 617 gagagagtcattgtggataagcacataattgatggccgaactgttgaagccaagaaggct 676
Query: 241 gttcctagggatgatcag 258
|||||| |||||||||||
Sbjct: 677 gttcctcgggatgatcag 694
>gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (58%)
Length = 2146
Score = 159 bits (80), Expect = 4e-38
Identities = 197/236 (83%)
Strand = Plus / Plus
Query: 313 acaaaaaagatttttgttggaggtttaccatcaaccatcactgagagtgattttaaaaag 372
||||| ||||| |||||||||||| ||||||| || || ||||||||||||||||| ||
Sbjct: 445 acaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaagaac 504
Query: 373 tattttgatcagtttggtacaattactgatgttgtagtgatgtatgatcacaatactcag 432
|| |||||||||||||| |||||||| |||||||| ||||||||||| || || || ||
Sbjct: 505 tactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacacacaa 564
Query: 433 aggccaagaggttttggctttatcacatatgattcagaagaagctgtggataaagttctc 492
||||| ||||||||||| || || || | |||||| || |||| || || ||||||||
Sbjct: 565 aggcctagaggttttggattcataacctttgattctgaggaaggagttgagaaagttctg 624
Query: 493 tataaaacgtttcatgaactcaatgcaaagatggttgaagtcaagagagcagttcc 548
|| ||||| ||||||||||| |||| || |||||||| || |||||||| |||||
Sbjct: 625 tacaaaacttttcatgaactgaatggtaaaatggttgaggttaagagagctgttcc 680
>gnl|LJGI|TC73957 weakly similar to UniRef100_A7Q348 Cluster: Chromosome chr12
scaffold_47, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 768
Score = 141 bits (71), Expect = 9e-33
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 904 gggagaagcgattcttttataaactcaccttctaggaatgtttggggaaatgaaaatggg 963
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gggagaagcgattcttttataaactcaccttataggaatgtttggggaaatgaaaatggg 60
Query: 964 gggcctgaatagtgc 978
|||||||||||||||
Sbjct: 61 gggcctgaatagtgc 75
>gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (33%)
Length = 622
Score = 129 bits (65), Expect = 4e-29
Identities = 119/137 (86%)
Strand = Plus / Plus
Query: 313 acaaaaaagatttttgttggaggtttaccatcaaccatcactgagagtgattttaaaaag 372
||||| ||||| |||||||||||| ||||||| || || ||||||||||||||||| ||
Sbjct: 485 acaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaagaac 544
Query: 373 tattttgatcagtttggtacaattactgatgttgtagtgatgtatgatcacaatactcag 432
|| |||||||||||||| |||||||| |||||||| ||||||||||| || || || ||
Sbjct: 545 tactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacacacaa 604
Query: 433 aggccaagaggttttgg 449
||||| |||||||||||
Sbjct: 605 aggcctagaggttttgg 621
>gnl|LJGI|TC81664 weakly similar to UniRef100_A7P0F4 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (28%)
Length = 1090
Score = 61.9 bits (31), Expect = 7e-09
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 865 agcagatatacaacttctatttgctataatgggggtaatgggagaagcgattcttttata 924
||||||||||| ||| |||| |||| | ||||| |||| |||||| ||||| ||||
Sbjct: 94 agcagatataccactcctatcggctacagcgggggcaatgtgagaagtgattcgcttatg 153
Query: 925 aactcaccttctaggaatgtttggggaaatg 955
||||| |||||| ||||||||||||||||||
Sbjct: 154 aactctccttctcggaatgtttggggaaatg 184