Miyakogusa Predicted Gene

Lj6g3v0754260.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0754260.1 tr|Q00Y64|Q00Y64_OSTTA Hydroxymethylpyrimidine
kinase (ISS) OS=Ostreococcus tauri GN=Ot12g00960 PE=3,53.75,8e-18,no
description,Nucleotide-binding, alpha-beta plait; RNA recognition
motif,RNA recognition motif
dom,NODE_19222_length_1476_cov_73.412605.path2.1
         (1432 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS322912 similar to UniRef100_Q651Z0 Cluster: RNA-bindi...   182   4e-45

>gnl|LJGI|FS322912 similar to UniRef100_Q651Z0 Cluster: RNA-binding protein-like; n=1;
           Oryza sativa Japonica Group|Rep: RNA-binding
           protein-like - Oryza sativa subsp. japonica (Rice),
           partial (6%)
          Length = 569

 Score =  182 bits (92), Expect = 4e-45
 Identities = 152/172 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggaaggtgagggtggggatccaatggatcacttccaccgtaacgaagctatctcc 60
           ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 209 atggaggaaggtgagggcggagatcccatggatcagttccaccgtaacgaagctatatcc 268

                                                                       
Query: 61  gccgttgctgacgacggtttcctggccgaggaagacgacgattacgaggacctttacaac 120
           |||||||| |||||||| ||  |||| ||||| ||||| |||||||||||||||||||||
Sbjct: 269 gccgttgccgacgacgggtttttggctgaggaggacgatgattacgaggacctttacaac 328

                                                               
Query: 121 gatgtcaatgttggtgaagggttccttcaatccttgcgcaagaacgatgatt 172
           |||||||| |||||||| ||||| || || || ||||| |||||||| ||||
Sbjct: 329 gatgtcaacgttggtgaggggtttctccagtcgttgcggaagaacgaggatt 380