Miyakogusa Predicted Gene

Lj6g3v0673390.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0673390.1 Non Chatacterized Hit- tr|B8AGT4|B8AGT4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,28.35,1e-18,PPR,Pentatricopeptide repeat; no
description,Tetratricopeptide-like helical; PPR: pentatricopeptide
,CUFF.58159.1
         (1244 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68622 similar to UniRef100_A2Q460 Cluster: Pentatrico...   428   e-119
gnl|LJGI|TC73892 similar to UniRef100_A2Q460 Cluster: Pentatrico...   232   4e-60

>gnl|LJGI|TC68622 similar to UniRef100_A2Q460 Cluster: Pentatricopeptide repeat; n=1;
           Medicago truncatula|Rep: Pentatricopeptide repeat -
           Medicago truncatula (Barrel medic), partial (28%)
          Length = 734

 Score =  428 bits (216), Expect = e-119
 Identities = 219/220 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttacgtttttcaactgggcagttaaacacccagcgttgcctgaagacattggtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atggttacgtttttcaactgggcagttaaacacccagcgttgcctgaagacattggtagc 574

                                                                       
Query: 61  taccgtgtgattgtgaaggcactaggaagaagaaaatttttcagtttcatgatgggtgtg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 575 taccgtgtgattgtgaaggcactaggaagaagaaattttttcagtttcatgatgggtgtg 634

                                                                       
Query: 121 ttgcgtgacatgagggtgaatggcgtagaagctgatttgttgatgttatctattgttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttgcgtgacatgagggtgaatggcgtagaagctgatttgttgatgttatctattgttgtt 694

                                                   
Query: 181 gatagttttgtgagggctggtcatgtgtctaaggcgattc 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gatagttttgtgagggctggtcatgtgtctaaggcgattc 734


>gnl|LJGI|TC73892 similar to UniRef100_A2Q460 Cluster: Pentatricopeptide repeat; n=1;
            Medicago truncatula|Rep: Pentatricopeptide repeat -
            Medicago truncatula (Barrel medic), partial (7%)
          Length = 576

 Score =  232 bits (117), Expect = 4e-60
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1128 gctgcttgattcaaacaacgcagagagggcttacaagctgtttttgaagattaaacatgc 1187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gctgcttgattcaaacaacgcagagagggcttacaagctgtttttgaagattaaacatgc 60

                                                                     
Query: 1188 ccgttctcttgagaatgcgagaaattattggcgttccaatggttggcacttttgaac 1244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ccgttctcttgagaatgcgagaaattattggcgttccaatggttggcacttttgaac 117