Miyakogusa Predicted Gene
- Lj6g3v0657890.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0657890.2 tr|I1LN46|I1LN46_SOYBN DNA topoisomerase
OS=Glycine max GN=Gma.49661 PE=3 SV=1,90.88,0,PRTPISMRASEI,DNA
topoisomerase, type IA; TOPOISOMERASE_I_PROK,DNA topoisomerase, type
IA, active sit,CUFF.58128.2
(2013 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59268 similar to UniRef100_A7Q9K8 Cluster: DNA topois... 1596 0.0
gnl|LJGI|FS353501 similar to UniRef100_A7Q9K8 Cluster: DNA topoi... 894 0.0
gnl|LJGI|TC71710 similar to UniRef100_A7Q9K8 Cluster: DNA topois... 315 6e-85
gnl|LJGI|TC63534 similar to UniRef100_UPI000034EDEB Cluster: DNA... 147 3e-34
gnl|LJGI|AV765705 74 4e-12
>gnl|LJGI|TC59268 similar to UniRef100_A7Q9K8 Cluster: DNA topoisomerase; n=1; Vitis
vinifera|Rep: DNA topoisomerase - Vitis vinifera (Grape),
partial (29%)
Length = 805
Score = 1596 bits (805), Expect = 0.0
Identities = 805/805 (100%)
Strand = Plus / Plus
Query: 1009 acgttaggcataactttagtaagaggctatcaatcaattgatccagacctctgcctgccc 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgttaggcataactttagtaagaggctatcaatcaattgatccagacctctgcctgccc 60
Query: 1069 gatatccgtagcttcattgagcaacagattactcttattgctaagggtcagattgatcat 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatatccgtagcttcattgagcaacagattactcttattgctaagggtcagattgatcat 120
Query: 1129 catcgtgtagtgcagcatgtaatccaacaattcaagcagaagttttgttactttgtcaag 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catcgtgtagtgcagcatgtaatccaacaattcaagcagaagttttgttactttgtcaag 180
Query: 1189 aagattgaagccatggatgcattatttgaagcacaattttccacacttgttgattcaggc 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagattgaagccatggatgcattatttgaagcacaattttccacacttgttgattcaggc 240
Query: 1249 cgtattcttagtaaatgtgggaaatgcttgcggtatatgaagtacatttctgctcagccc 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtattcttagtaaatgtgggaaatgcttgcggtatatgaagtacatttctgctcagccc 300
Query: 1309 tcacgtttatattgcggtatatgtgaggaggtgtattatcttccacagaaaggcacaatc 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcacgtttatattgcggtatatgtgaggaggtgtattatcttccacagaaaggcacaatc 360
Query: 1369 aagctgtacaaggaattgtcttgtcctctagacaatttcgagcttttgctctgctcgatg 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagctgtacaaggaattgtcttgtcctctagacaatttcgagcttttgctctgctcgatg 420
Query: 1429 ggcccagatggtaaatctttccctctctgcccatactgctacagcaatcccccatttgaa 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggcccagatggtaaatctttccctctctgcccatactgctacagcaatcccccatttgaa 480
Query: 1489 ggtattgaagcactcataaatacggcgaaaactagtacttcgggcaagattggcaaggga 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggtattgaagcactcataaatacggcgaaaactagtacttcgggcaagattggcaaggga 540
Query: 1549 gctggcatgccatgcatcctatgtccccatcccacttgcccaaattctctggtttcccag 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gctggcatgccatgcatcctatgtccccatcccacttgcccaaattctctggtttcccag 600
Query: 1609 ggtgtatgtgcttgcccagagtgcagcgggacacttgtcttagacccagtaagtgctccc 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggtgtatgtgcttgcccagagtgcagcgggacacttgtcttagacccagtaagtgctccc 660
Query: 1669 aaatggcgactttgttgcaatatgtgcaattgcctagtttttcttgcacagggtgctcat 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaatggcgactttgttgcaatatgtgcaattgcctagtttttcttgcacagggtgctcat 720
Query: 1729 agaatttccactactaaagaacggtgccctgaatgcgactcttcaatcattgaagtggac 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agaatttccactactaaagaacggtgccctgaatgcgactcttcaatcattgaagtggac 780
Query: 1789 ttcaataagaaagcaactcctctag 1813
|||||||||||||||||||||||||
Sbjct: 781 ttcaataagaaagcaactcctctag 805
>gnl|LJGI|FS353501 similar to UniRef100_A7Q9K8 Cluster: DNA topoisomerase; n=1; Vitis
vinifera|Rep: DNA topoisomerase - Vitis vinifera (Grape),
partial (15%)
Length = 752
Score = 894 bits (451), Expect = 0.0
Identities = 451/451 (100%)
Strand = Plus / Minus
Query: 1370 agctgtacaaggaattgtcttgtcctctagacaatttcgagcttttgctctgctcgatgg 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agctgtacaaggaattgtcttgtcctctagacaatttcgagcttttgctctgctcgatgg 392
Query: 1430 gcccagatggtaaatctttccctctctgcccatactgctacagcaatcccccatttgaag 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcccagatggtaaatctttccctctctgcccatactgctacagcaatcccccatttgaag 332
Query: 1490 gtattgaagcactcataaatacggcgaaaactagtacttcgggcaagattggcaagggag 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtattgaagcactcataaatacggcgaaaactagtacttcgggcaagattggcaagggag 272
Query: 1550 ctggcatgccatgcatcctatgtccccatcccacttgcccaaattctctggtttcccagg 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctggcatgccatgcatcctatgtccccatcccacttgcccaaattctctggtttcccagg 212
Query: 1610 gtgtatgtgcttgcccagagtgcagcgggacacttgtcttagacccagtaagtgctccca 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtgtatgtgcttgcccagagtgcagcgggacacttgtcttagacccagtaagtgctccca 152
Query: 1670 aatggcgactttgttgcaatatgtgcaattgcctagtttttcttgcacagggtgctcata 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aatggcgactttgttgcaatatgtgcaattgcctagtttttcttgcacagggtgctcata 92
Query: 1730 gaatttccactactaaagaacggtgccctgaatgcgactcttcaatcattgaagtggact 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gaatttccactactaaagaacggtgccctgaatgcgactcttcaatcattgaagtggact 32
Query: 1790 tcaataagaaagcaactcctctagaagatgg 1820
|||||||||||||||||||||||||||||||
Sbjct: 31 tcaataagaaagcaactcctctagaagatgg 1
>gnl|LJGI|TC71710 similar to UniRef100_A7Q9K8 Cluster: DNA topoisomerase; n=1; Vitis
vinifera|Rep: DNA topoisomerase - Vitis vinifera (Grape),
partial (3%)
Length = 520
Score = 315 bits (159), Expect = 6e-85
Identities = 162/163 (99%)
Strand = Plus / Plus
Query: 1851 tgatgagttactgcattcccttgtggagatgaaacatgggagaggcttcaggcagagttc 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgagttactgcattcccttgtggagatgaaacatgggagaggcttcaggcagagttc 60
Query: 1911 acggggaagaggaagaggaggaagaaaaggcgggtataggggcagaggacgcaggggtgg 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acggggaagaggaagaggaggaagaaaaggcgggtataggggcagaggacgcaggggtgg 120
Query: 1971 atcaatggtggacccaaaaatgagtttccgagatttctaagca 2013
||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 atcaatggtggacccgaaaatgagtttccgagatttctaagca 163
>gnl|LJGI|TC63534 similar to UniRef100_UPI000034EDEB Cluster: DNA topoisomerase
family protein; n=1; Arabidopsis thaliana|Rep: DNA
topoisomerase family protein - Arabidopsis thaliana,
partial (25%)
Length = 794
Score = 147 bits (74), Expect = 3e-34
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 39 ctatggaccatgtcaaactcctactttaggattttgcgtgcagcggtatttacaaataaa 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctatggaccatgtcaaactcctactttaggattttgcgtgcagcggtatttacaaataaa 780
Query: 99 tactttcaagccag 112
||||||||||||||
Sbjct: 781 tactttcaagccag 794
>gnl|LJGI|AV765705
Length = 363
Score = 73.8 bits (37), Expect = 4e-12
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1977 ggtggacccaaaaatgagtttccgagatttctaagca 2013
|||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggtggacccaaaaatgagtttccgagatttctaagca 327