Miyakogusa Predicted Gene

Lj6g3v0574840.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0574840.1 Non Chatacterized Hit- tr|K4BY95|K4BY95_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,48.84,0.000000000000002,SUBFAMILY NOT NAMED,NULL; COILIN
P80,Coilin; seg,NULL,CUFF.58298.1
         (1215 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74215 similar to UniRef100_A7P491 Cluster: Chromosome...   573   e-163

>gnl|LJGI|TC74215 similar to UniRef100_A7P491 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (7%)
          Length = 832

 Score =  573 bits (289), Expect = e-163
 Identities = 328/341 (96%), Gaps = 10/341 (2%)
 Strand = Plus / Minus

                                                                        
Query: 884  aggtagagtatacatcccttgctgatgttagaatggtcaagcatgccaactctaattccg 943
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  aggtagagtatacatccct-gctgatgttagaatggtcaagcatgccaactctaattccg 727

                                                                        
Query: 944  caactgcagttgcttctactgatgctttggtcaatccaccaaaagcaactaacggcagca 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  caactgcagttgcttctactgatgctttggtcaatccaccaaaagcaactaacggcagca 667

                                                                        
Query: 1004 ctgatgaaaaacctgc---------taaagaaaatggtggagtaagcgtctgggatgaaa 1054
            |||||||||||| ||          || ||||||||||||||||||||||||||||||||
Sbjct: 666  ctgatgaaaaacatgtggatctctttacagaaaatggtggagtaagcgtctgggatgaaa 607

                                                                        
Query: 1055 ttaacgaggcattaaatgcaaagaaggccaagctttctcaggagaatggctggaccaaag 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  ttaacgaggcattaaatgcaaagaaggccaagctttctcaggagaatggctggaccaaag 547

                                                                        
Query: 1115 aagagaccacaggcacacggtcatggtcctacagggccatgagaggcagtgcgctgggtc 1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  aagagaccacaggcacacggtcatggtcctacagggccatgagaggcagtgcgctgggtc 487

                                                     
Query: 1175 ccacaatggcacgtttaaggtcacagaatcaactttaagaa 1215
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 486  ccacaatggcacgtttaaggtcacagaatcaactttaagaa 446