Miyakogusa Predicted Gene

Lj6g3v0528510.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0528510.1 tr|F2EJF8|F2EJF8_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,51.09,3e-19,Ribosomal
proteins S24e, L23 and L15e,Ribosomal protein L23/L15e core domain; no
description,Nucleot,CUFF.58011.1
         (337 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74504 weakly similar to UniRef100_Q38HS8 Cluster: Rib...   668   0.0  
gnl|LJGI|TC59643 similar to UniRef100_A7R280 Cluster: Chromosome...    52   2e-06

>gnl|LJGI|TC74504 weakly similar to UniRef100_Q38HS8 Cluster: Ribosomal protein L23
           family protein; n=1; Solanum tuberosum|Rep: Ribosomal
           protein L23 family protein - Solanum tuberosum (Potato),
           partial (47%)
          Length = 557

 Score =  668 bits (337), Expect = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacacacatagcatacctacccatgattccgatcatgcccaagacttcctccgacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28  atgacacacatagcatacctacccatgattccgatcatgcccaagacttcctccgacatc 87

                                                                       
Query: 61  aaagaaatctccttcaagacactcccttcagcttccaagctcgaaatcaagcatgtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  aaagaaatctccttcaagacactcccttcagcttccaagctcgaaatcaagcatgtcatt 147

                                                                       
Query: 121 gaatcctactacgacttggaggtcaaaaaggtgcgaacattgaacatgaagggcaaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gaatcctactacgacttggaggtcaaaaaggtgcgaacattgaacatgaagggcaaaaag 207

                                                                       
Query: 181 aagcacagttctggctttttgtatgccaaacctgattacaagaaggcctatgtcaccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aagcacagttctggctttttgtatgccaaacctgattacaagaaggcctatgtcaccctc 267

                                                                       
Query: 241 aagaaacccatttccctcacccaggacattttccctttacgtactaccaatgccgccaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagaaacccatttccctcacccaggacattttccctttacgtactaccaatgccgccaag 327

                                                
Query: 301 gacgataaaaagatggtggcagccagtgctagctagt 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 328 gacgataaaaagatggtggcagccagtgctagctagt 364


>gnl|LJGI|TC59643 similar to UniRef100_A7R280 Cluster: Chromosome undetermined
           scaffold_408, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_408,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (85%)
          Length = 748

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 208 aaacctgattacaagaaggcctatgtcaccctcaagaa 245
           |||||||| |||||||| |||||||| |||||||||||
Sbjct: 295 aaacctgactacaagaaagcctatgttaccctcaagaa 332