Miyakogusa Predicted Gene

Lj6g3v0528470.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0528470.1 CUFF.58009.1
         (528 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS342372 weakly similar to UniRef100_A7QZY6 Cluster: Ch...   244   5e-64
gnl|LJGI|DC595903 similar to UniRef100_A7QEM0 Cluster: Chromosom...    58   6e-08

>gnl|LJGI|FS342372 weakly similar to UniRef100_A7QZY6 Cluster: Chromosome undetermined
           scaffold_293, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_293,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (30%)
          Length = 782

 Score =  244 bits (123), Expect = 5e-64
 Identities = 224/256 (87%), Gaps = 5/256 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   atgataaaggcaactacactgcaaaaacagtacctaccagaccaacctcaacaccctctt 64
           ||||||| |||||||||||||  ||||||||| |||| ||||||||||||||||||||||
Sbjct: 80  atgataacggcaactacactg--aaaacagtaactacaagaccaacctcaacaccctctt 137

                                                                       
Query: 65  gtcaagtttgtcttccaaccacacacaaattgattatggcttctacaatttctctcaggg 124
           ||||  | |||||||||||   ||||||||||||||||||||||| ||||||||  ||||
Sbjct: 138 gtcatctctgtcttccaac---acacaaattgattatggcttctataatttctccgaggg 194

                                                                       
Query: 125 acaaaaatctgacaaagttaatgcaattgggatgtgtagaggagatgttgagccagatgt 184
            ||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||   
Sbjct: 195 ccaaaactctgacaaagttaactcaattgggatgtgtagaggagatgttaagccagaaac 254

                                                                       
Query: 185 ttgccgaagctgccttaatgactccagagtcattctcacacgaagttgtccaaaccagaa 244
           |||||| || ||||| ||||| || |||||| ||||||| |   ||||||||||||||||
Sbjct: 255 ttgccgcagttgcctcaatgattcaagagtccttctcacgcagcgttgtccaaaccagaa 314

                           
Query: 245 agaggctattggctgg 260
           ||||||||||||||||
Sbjct: 315 agaggctattggctgg 330


>gnl|LJGI|DC595903 similar to UniRef100_A7QEM0 Cluster: Chromosome chr17 scaffold_85,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_85, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (6%)
          Length = 532

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 398 ctgaagatgacagtgaaattgaacctgctgataaaatgcatttcaactt 446
           ||||||||||||||| ||||||||||||| ||| |||||| || |||||
Sbjct: 480 ctgaagatgacagtggaattgaacctgctaatacaatgcaattaaactt 528