Miyakogusa Predicted Gene

Lj6g3v0524040.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0524040.2 tr|C1K5B8|C1K5B8_WHEAT Chlorophyll a-b binding
protein OS=Triticum aestivum GN=CBP4 PE=2 SV=1,38.16,0.25,no
description,Chlorophyll a/b binding protein domain; Chlorophyll a-b
binding protein,Chlorophyll a,CUFF.58006.2
         (486 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77930 similar to UniRef100_Q0PWS7 Cluster: Chloroplas...   888   0.0  
gnl|LJGI|TC72068 similar to UniRef100_Q9XQB2 Cluster: Chlorophyl...   159   2e-38

>gnl|LJGI|TC77930 similar to UniRef100_Q0PWS7 Cluster: Chloroplast pigment-binding
           protein CP29; n=1; Nicotiana tabacum|Rep: Chloroplast
           pigment-binding protein CP29 - Nicotiana tabacum (Common
           tobacco), partial (88%)
          Length = 1155

 Score =  888 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus

                                                                       
Query: 39  ggttttcgggattcagaggttccgtgaatgcgaggtcattcatggaaggtgggccatgct 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggttttcgggattcagaggttccgtgaatgcgaggtcattcatggaaggtgggccatgct 571

                                                                       
Query: 99  tggtgctcttggtgctttgtctgttgaagctctcactggggttgcatggcaagatgctgg 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggtgctcttggtgctttgtctgttgaagctctcactggggttgcatggcaagatgctgg 631

                                                                       
Query: 159 aaaggtagagctggtggatgggtcatcctacctgggacttccacttccattctcaatcac 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaaggtagagctggtggatgggtcatcctacctgggacttccacttccattctcaatcac 691

                                                                       
Query: 219 cacattgatctggatcgaggtgttagtgattggctacattgagttccagagaaatgcaga 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cacattgatctggatcgaggtgttagtgattggctacattgagttccagagaaatgcaga 751

                                                                       
Query: 279 gcttgaccctgagaaaaggctatacccaggaggcaagttcttcgatcctctggggttggc 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gcttgaccctgagaaaaggctatacccaggaggcaagttcttcgatcctctggggttggc 811

                                                                       
Query: 339 gaacgaccctgaggagaaggaaagacttcaactggcagagatcaagcattctcgcttagc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaacgaccctgaggagaaggaaagacttcaactggcagagatcaagcattctcgcttagc 871

                                                                       
Query: 399 tatggtggtgttcctgatctttgcaattcaagctgctgtaacaggcaaaggccctatcag 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tatggtggtgttcctgatctttgcaattcaagctgctgtaacaggcaaaggccctatcag 931

                                       
Query: 459 ttttcttgcaaccttcaacaagtgacat 486
           ||||||||||||||||||||||||||||
Sbjct: 932 ttttcttgcaaccttcaacaagtgacat 959



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 1   atgacggactggaccagaacctggcgaagaatctcgccgg 40
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atgacggactggaccagaacctggcgaagaatctcgccgg 445


>gnl|LJGI|TC72068 similar to UniRef100_Q9XQB2 Cluster: Chlorophyll a/b binding
           protein CP29; n=1; Vigna radiata var. radiata|Rep:
           Chlorophyll a/b binding protein CP29 - Phaseolus aureus
           (Mung bean) (Vigna radiata), complete
          Length = 1130

 Score =  159 bits (80), Expect = 2e-38
 Identities = 206/248 (83%)
 Strand = Plus / Plus

                                                                       
Query: 145 tggcaagatgctggaaaggtagagctggtggatgggtcatcctacctgggacttccactt 204
           |||||||| || || ||||| ||||| || || |||||||| ||||| || || ||||| 
Sbjct: 600 tggcaagacgccggcaaggtggagcttgtagaagggtcatcataccttggtctaccactc 659

                                                                       
Query: 205 ccattctcaatcaccacattgatctggatcgaggtgttagtgattggctacattgagttc 264
           ||||||||||||||| ||||||| ||||| || || || |||||||| ||||||||||||
Sbjct: 660 ccattctcaatcaccgcattgatttggattgaagttttggtgattgggtacattgagttc 719

                                                                       
Query: 265 cagagaaatgcagagcttgaccctgagaaaaggctatacccaggaggcaagttcttcgat 324
           || ||||| || ||||||||||||||||| ||||| |||||||| ||||  |||||||| 
Sbjct: 720 caaagaaacgctgagcttgaccctgagaagaggctgtacccaggtggcagcttcttcgac 779

                                                                       
Query: 325 cctctggggttggcgaacgaccctgaggagaaggaaagacttcaactggcagagatcaag 384
           ||||| || |||||    ||||||||| ||||||  |  |||||| ||||||| ||||||
Sbjct: 780 cctctcggcttggccgcggaccctgagaagaaggccacccttcaattggcagaaatcaag 839

                   
Query: 385 cattctcg 392
           ||| ||||
Sbjct: 840 catgctcg 847