Miyakogusa Predicted Gene
- Lj6g3v0468630.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0468630.1 Non Chatacterized Hit- tr|C0JP34|C0JP34_LOTJA
Putative basic helix-loop-helix protein BHLH26
(Fragme,100,0,HLH,Helix-loop-helix domain; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; HLH, helix-loop-helix ,gene.g64278.t1.1
(945 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75292 similar to UniRef100_Q2HTN6 Cluster: Helix-loop... 932 0.0
gnl|LJGI|TC73753 similar to UniRef100_A7PSE3 Cluster: Chromosome... 165 6e-40
gnl|LJGI|TC73122 homologue to UniRef100_UPI0000162E7F Cluster: b... 145 6e-34
gnl|LJGI|TC80943 similar to UniRef100_A7NUT0 Cluster: Chromosome... 70 3e-11
gnl|LJGI|TC76917 similar to UniRef100_A7NUT0 Cluster: Chromosome... 62 7e-09
>gnl|LJGI|TC75292 similar to UniRef100_Q2HTN6 Cluster: Helix-loop-helix DNA-binding;
n=1; Medicago truncatula|Rep: Helix-loop-helix
DNA-binding - Medicago truncatula (Barrel medic),
partial (24%)
Length = 675
Score = 932 bits (470), Expect = 0.0
Identities = 476/478 (99%)
Strand = Plus / Plus
Query: 9 agagagaaacagagagatggcactagaagcagtggtgtatgatccacaagcacaagaccc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agagagaaacagagagatggcactagaagcagtggtgtatgatccacaagcacaagaccc 257
Query: 69 ttttggttatggattcaaagacttgtacaactgcaactttctggctgatactaccaactg 128
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 258 ttttggttatggattcaaagacttgtacaactgcaactttctggaggatactaccaactg 317
Query: 129 gggctatgaaaaactcaaccttgagaaagatgataagcaaatagagaattacccttatgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggctatgaaaaactcaaccttgagaaagatgataagcaaatagagaattacccttatgg 377
Query: 189 agattggagtagctccaccacctcttcaatgttaccccacatgaatgagcttcaagaaac 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agattggagtagctccaccacctcttcaatgttaccccacatgaatgagcttcaagaaac 437
Query: 249 cactgaccccagcaacacttcaaattttgcttcagctaggcctaagaggcgcagagccag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cactgaccccagcaacacttcaaattttgcttcagctaggcctaagaggcgcagagccag 497
Query: 309 aagtagaaagaacaaggaagaaattgagaaccagagaatgactcacattgctgtggagcg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagtagaaagaacaaggaagaaattgagaaccagagaatgactcacattgctgtggagcg 557
Query: 369 aaatagaagaaagcagatgaatgagtatctctctgttcttcgctctctcatgccagaatc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaatagaagaaagcagatgaatgagtatctctctgttcttcgctctctcatgccagaatc 617
Query: 429 atacatccaaaggggtgatcaagcttctataattggaggggctattaactttgttaga 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atacatccaaaggggtgatcaagcttctataattggaggggctattaactttgttaga 675
>gnl|LJGI|TC73753 similar to UniRef100_A7PSE3 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 521
Score = 165 bits (83), Expect = 6e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 863 gcaagttgggatcagtggatgatatagctgcagctgtataccagatgttggataggattc 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaagttgggatcagtggatgatatagctgcagctgtataccagatgttggataggattc 60
Query: 923 accaagaggcaatgctgaattaa 945
|||||||||||||||||||||||
Sbjct: 61 accaagaggcaatgctgaattaa 83
>gnl|LJGI|TC73122 homologue to UniRef100_UPI0000162E7F Cluster: basic
helix-loop-helix (bHLH) family protein; n=1; Arabidopsis
thaliana|Rep: basic helix-loop-helix (bHLH) family
protein - Arabidopsis thaliana, partial (14%)
Length = 464
Score = 145 bits (73), Expect = 6e-34
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 292 aagaggcgcagagccagaagtagaaagaacaaggaagaaattgagaaccagagaatgact 351
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagaggcgcagagccagaagcagaaagaacaaggaagaaattgagaaccagagaatgact 435
Query: 352 cacattgctgtggagcgaaatagaagaaa 380
||||||||||| ||||| || ||||||||
Sbjct: 436 cacattgctgtagagcgcaacagaagaaa 464
Score = 56.0 bits (28), Expect = 4e-07
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 25 atggcactagaagcagtggtgtatgatccacaagcacaagacccttttggttatggattc 84
|||||| |||||||||| |||||| |||||| |||||||||| |||||||||||| |
Sbjct: 40 atggcattagaagcagtagtgtat---ccacaaccacaagacccgtttggttatggaatt 96
Query: 85 aaagac 90
||||||
Sbjct: 97 aaagac 102
>gnl|LJGI|TC80943 similar to UniRef100_A7NUT0 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 770
Score = 69.9 bits (35), Expect = 3e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 436 caaaggggtgatcaagcttctataattggaggggctattaactttgt 482
||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 556 caaaggggtgatcaagcttctatcattggaggtgccattaactttgt 602
>gnl|LJGI|TC76917 similar to UniRef100_A7NUT0 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 539
Score = 61.9 bits (31), Expect = 7e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 436 caaaggggtgatcaagcttctataattggaggggctattaactttgt 482
||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 487 caaaggggtgaccaagcgtctattattggaggtgctattaactttgt 533