Miyakogusa Predicted Gene

Lj6g3v0437220.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0437220.1 Non Chatacterized Hit- tr|Q0RU40|Q0RU40_FRAAA
Putative uncharacterized protein OS=Frankia alni
(stra,53.33,0.52,seg,NULL,CUFF.57849.1
         (403 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC597923 similar to UniRef100_Q67966 Cluster: Core prot...    54   7e-07

>gnl|LJGI|DC597923 similar to UniRef100_Q67966 Cluster: Core protein; n=3; Hepatitis B
           virus|Rep: Core protein - Hepatitis B virus (HBV),
           partial (9%)
          Length = 573

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 27  aaattgccctcaaaattgtaaaattaggttaaaatttgagggtacttttggaatttcgc 85
           ||||||||||  ||||| || |||||||||||| |||||||| | |||||| |||||||
Sbjct: 279 aaattgcccttgaaattttataattaggttaaactttgagggcaattttgggatttcgc 221