Miyakogusa Predicted Gene

Lj6g3v0435070.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0435070.1 tr|Q5YJP8|Q5YJP8_HYAOR Pentatricopeptide repeat
protein-like protein (Fragment) OS=Hyacinthus
orient,40.2,5e-16,PPR_2,Pentatricopeptide repeat; seg,NULL; FAMILY NOT
NAMED,NULL; PPR: pentatricopeptide repeat domai,CUFF.57841.1
         (571 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS357011 similar to UniRef100_A7PR97 Cluster: Chromosom...   482   e-135

>gnl|LJGI|FS357011 similar to UniRef100_A7PR97 Cluster: Chromosome chr14 scaffold_26,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_26, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (9%)
          Length = 605

 Score =  482 bits (243), Expect = e-135
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 321 catggcgatgaaagtttggaagtgcgaggtggagcattaccggagggatttagaggatac 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 catggcgatgaaagtttggaagtgcgaggtggagcattaccggagggatttagaggatac 546

                                                                       
Query: 381 cgcgaatttactggttgtagggcttagggatcttgatagggtcccggaagcggttaagta 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgcgaatttactggttgtagggcttagggatcttgatagggtcccggaagcggttaagta 486

                                                                       
Query: 441 tgctgaggatatgattggcagagggatcaagctaacctcttccacattgtctaagttgaa 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgctgaggatatgattggcagagggatcaagctaacctcttccacattgtctaagttgaa 426

                                                                       
Query: 501 acacaggcttgtcaaaggaagaaaagaatttttgtatgaagagcttttgagaaagtggaa 560
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 425 acacagccttgtcaaaggaagaaaagaatttgtgtatgaagagcttttgagaaagtggaa 366

                      
Query: 561 atcgcattagg 571
           |||||||||||
Sbjct: 365 atcgcattagg 355